Evolution.h File Reference

#include <cmath>

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Functions
double	GrishinDistance (double q, double err=0.0000001)

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Function Documentation

double GrishinDistance	(	double	q,
		double	err = 0.0000001
	)

This package contains functions for generating phylogenetic trees Estimate the number if substitutions per site given the observed fraction of identical residues between two sequences. Using the Grishin (1995) method.

Parameters:

	q	is the probility of the site being the same. Is is usually measured as the fraction of identical redidues
	err	is the error required for the result. default 0.0000001

Returns:

the number of amino acid substitutions per site

Referenced by main().