Gmapres.cpp File Reference

#include "Gmapres.h"
#include "strformat.h"

Functions
ostream &	operator<< (ostream &ous, const Gmapalnseg &as)
ostream &	operator<< (ostream &ous, const Gmapath &pa)
ostream &	operator<< (ostream &ous, const Gmapres &res)

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Function Documentation

ostream& operator<<	(	ostream &	ous,
		const Gmapres &	res
	)

<cDNA id>=""> TAB <number of="" paths>=""> Gmappath objects ....

References Gmapres::cid, Gmapres::numpath, and Gmapres::paths.

ostream& operator<<	(	ostream &	ous,
		const Gmapath &	pa
	)

<GID> TAB <Model direction="" rel="" to="" cdna>=""> TAB <Overall cdna="" range>=""> TAB <Overall genomic="" range>=""> <coverage> TAB <TrimCoverage> TAB <Identity> TAB <match> TAB <mismatch> TAB <indel> TAB <unknown> Followd by tabular, one alignment seg per line

Gmapalnseg object output format ...

References Gmapath::align, Gmapath::cov, Gmapath::crange, Gmapath::gid, Gmapath::grange, Gmapath::iden, Gmapath::indel, Gmapath::match, Gmapath::mismatch, Gmapath::modirect, Gmapath::trimcov, and Gmapath::unknown.

ostream& operator<<	(	ostream &	ous,
		const Gmapalnseg &	as
	)

<cDNA range>=""> TAB <Genomic range>=""> TAB <Identity>

References Gmapalnseg::cr, Gmapalnseg::gr, and Gmapalnseg::iden.