Match.cpp File Reference

#include "Match.h"
#include <sstream>
#include <functional>
#include <iomanip>
#include <algorithm>
#include <fstream>
#include <cmath>

Functions
ostream &	operator<< (ostream &ous, M8Match &m)
ostream &	operator<< (ostream &ous, const M8MatchEX &m)
ostream &	operator<< (ostream &ous, const M8MatchChain &c)
ostream &	operator<< (ostream &ous, const Tblastn &b)

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Function Documentation

ostream& operator<<	(	ostream &	ous,
		const Tblastn &	b
	)

References Tblastn::matches, Tblastn::qid, Tblastn::qlen, Tblastn::tid, and Tblastn::tlen.

ostream& operator<<	(	ostream &	ous,
		const M8MatchChain &	c
	)

References M8MatchChain::_first, M8MatchChain::_last, M8MatchChain::chain, and M8MatchChain::direction().

ostream& operator<<	(	ostream &	ous,
		const M8MatchEX &	m
	)

References M8MatchEX::after, M8MatchEX::before, M8Match::e, M8Match::gap, M8Match::iden, M8Match::len, M8MatchEX::maxScore, M8Match::mis, Match::queryRange(), M8Match::score(), and Match::targetRange().

ostream& operator<<	(	ostream &	ous,
		M8Match &	m
	)

output for human to read: using tabs iden, len, mis, gap, e, score

References M8Match::_score, M8Match::e, M8Match::gap, M8Match::iden, M8Match::len, M8Match::mis, Match::queryRange(), and Match::targetRange().