align.h

Go to the documentation of this file.
00001 #ifndef SCRIPTLIB_H
00002 #define SCRIPTLIB_H
00003 /* $Id: align.h,v 1.1.1.1 2007-07-13 03:44:06 kzhou Exp $ */
00004 extern void align_path(int,int,int,int,int,edit_script**,edit_script**);
00005 extern int  align_get_dist(int, int, int, int, int);
00006 extern void Condense_script(edit_script *);
00007 extern void Condense_both_Ends(edit_script **, edit_script **, edit_script **);
00008 extern void S2A(edit_script *, int *, int);
00009 extern void align_reverse(int *);
00010 extern void IDISPLAY(const char *, const char *, int, int, int *, int, int,int, const exon *);
00011 extern void Free_script(edit_script *);
00012 extern void Flip_script(struct edit_script **);
00013 
00014 #ifdef AUXUTILS
00015 extern void Reverse_script(edit_script *);
00016 extern void Print_script(edit_script *head, int M, int N);
00017 #endif
00018 
00019 #endif /* SCRIPTLIB_H */