align.h File Reference

Go to the source code of this file.

Functions
void	align_path (int, int, int, int, int, edit_script **, edit_script **)
int	align_get_dist (int, int, int, int, int)
void	Condense_script (edit_script *)
void	Condense_both_Ends (edit_script **, edit_script **, edit_script **)
void	S2A (edit_script *, int *, int)
void	align_reverse (int *)
void	IDISPLAY (const char *, const char *, int, int, int *, int, int, int, const exon *)
void	Free_script (edit_script *)
void	Flip_script (struct edit_script **)

---

Function Documentation

int align_get_dist	(	int	,
		int	,
		int	,
		int	,
		int
	)

References ckalloc(), max, min, MININT, snake(), and upper().

Referenced by pluri_align().

void align_path	(	int	,
		int	,
		int	,
		int	,
		int	,
		edit_script **	,
		edit_script **
	)

References align_path(), ckalloc(), DELETE, FALSE, INSERT, M, max, min, edit_script::next, edit_script::num, edit_script::op_type, rsnake(), snake(), SUBSTITUTE, TRUE, and upper().

Referenced by align_path(), and pluri_align().

void align_reverse

(

int *

)

Referenced by print_align_blk(), and print_align_lat().

void Condense_both_Ends	(	edit_script **	,
		edit_script **	,
		edit_script **
	)

References edit_script::next, edit_script::num, and edit_script::op_type.

Referenced by pluri_align().

void Condense_script

(

edit_script *

)

References edit_script::next, edit_script::num, and edit_script::op_type.

void Flip_script

(

struct edit_script **

)

References edit_script::next.

void Free_script

(

edit_script *

)

References edit_script::next.

Referenced by free_align(), print_align_blk(), and print_align_lat().

void IDISPLAY	(	const char *	,
		const char *	,
		int	,
		int	,
		int *	,
		int	,
		int	,
		int	,
		const exon *
	)

void S2A	(	edit_script *	,
		int *	,
		int
	)

References INSERT, edit_script::next, edit_script::num, edit_script::op_type, and SUBSTITUTE.

Referenced by print_align_blk(), and print_align_lat().