codon.h File Reference

#include <map>
#include <string>
#include <iostream>
#include <vector>
#include <set>

Go to the source code of this file.

Classes
class	codon
Functions
int	hashbase (char n)
int	hashcodon (char c[3])
int	hashcodon (const string &cc)

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Function Documentation

int hashbase

(

char

n

)

convert base to integer A=>0, C=>1, G=>2, T,U=>3, S,W,R,Y,K,M,B,V,H,D,N => 4-14 regardless of case

int hashcodon

(

const string &

cc

)

int hashcodon

(

char

c[3]

)

convert 3-letter codon to a integer from 0-63 for regular codon with letter from [ACGT] if codon length is 1 then return 64, 2 ten 65, other 66