blast.h File Reference

#include <string>
#include <cstring>
#include <iostream>

Go to the source code of this file.

Classes
class	alnsummary
class	alignment
class	region
Defines
#define	LINE   90
#define	MATRIX   BLOSUM62
#define	Mexp   -0.945
Functions
void	split (char ln[], int &s, string &seq, int &e)
Variables
const int	PAM120 [24][24]
const int	BLOSUM62 [24][24]
const int	BLOSUM62_12 [24][24]
const double	aafq [20]

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Define Documentation

#define LINE   90

#define MATRIX   BLOSUM62

Referenced by dyaln::initParameter(), loadDeltaFunction(), main(), mgsaln(), parseargs(), parseargs_str_new(), dyaln::setup(), and topscore().

#define Mexp   -0.945

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Function Documentation

void split	(	char	ln[],
		int &	s,
		string &	seq,
		int &	e
	)

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Variable Documentation

const double aafq[20]

const int BLOSUM62[24][24]

const int BLOSUM62_12[24][24]

const int PAM120[24][24]