blpur.cpp File Reference

#include <cstdlib>
#include <cmath>
#include <cstdio>
#include <iostream>
#include <fstream>
#include <string>
#include <cstring>
#include <vector>
#include <list>
#include <sstream>
#include "blast.h"
#include "prtMatrix.h"

Classes
struct	suml
Functions
string	getQuery (const char ln[])
void	nameOutfile (const char ipf[], const char ext[], char opf[])
int	getQueryLen (const char ln[])
void	discardTo (istream &ins, const char mark[], char ln[])
bool	addHSP (list< region > &rl, const alignment &aln, double sc, double ec, int cvl, double bl)
void	npurify (ifstream &IN, ofstream &OU, ofstream &ACE, char meth[], int lcut, double scut)
void	xpurify (ifstream &ins, ostream &ous, ostream &ace, const char m[], double scut, double ecut, int cl, double bl)
int	nextHit (string &qu, ifstream &ins, string &bf, char ln[])
vector< suml >	readSumm (vector< alnsummary > &sv, string &bf, char ln[], istream &ins)
int	main (int argc, char *argv[])

---

Function Documentation

bool addHSP	(	list< region > &	rl,
		const alignment &	aln,
		double	sc,
		double	ec,
		int	cvl,
		double	bl
	)

void discardTo	(	istream &	ins,
		const char	mark[],
		char	ln[]
	)

string getQuery

(

const char

ln[]

)

int getQueryLen

(

const char

ln[]

)

int main	(	int	argc,
		char *	argv[]
	)

References ifstream(), LINE, nameOutfile(), npurify(), and xpurify().

void nameOutfile	(	const char	ipf[],
		const char	ext[],
		char	opf[]
	)

int nextHit	(	string &	qu,
		ifstream &	ins,
		string &	bf,
		char	ln[]
	)

void npurify	(	ifstream &	IN,
		ofstream &	OU,
		ofstream &	ACE,
		char	meth[],
		int	lcut,
		double	scut
	)

vector<suml> readSumm	(	vector< alnsummary > &	sv,
		string &	bf,
		char	ln[],
		istream &	ins
	)

void xpurify	(	ifstream &	ins,
		ostream &	ous,
		ostream &	ace,
		const char	m[],
		double	scut,
		double	ecut,
		int	cl,
		double	bl
	)