ASCountKeeper Class Reference

List of all members.

Public Member Functions
	ASCountKeeper ()
void	addCE (int i1, int i2, int i3, int i4)
void	addCE (int i1, int i2, int i3, int i4, int i5, char aord)
void	addCE (int i1, int i2, int i3, int i4, int i5, int i6)
void	addCE (const vector< int > &points)
void	addCE (const vector< int > &points, char aord)
void	addME (int i1, int i2, int i3, int i4, int i5, int i6)
void	addAD (int i1, int i2, int i3)
void	addAA (int i1, int i2, int i3)
void	addOther (const vector< int > &points)
void	accumulate (int astc[11])
Public Attributes
set< vector< int > >	AD
set< vector< int > >	AA
set< vector< int > >	CE
set< vector< int > >	CE_AD
set< vector< int > >	CE_AA
set< vector< int > >	CE_ADAA
set< vector< int > >	IR
set< vector< int > >	ADAA
set< vector< int > >	CEorAAend
set< vector< int > >	ME
set< vector< int > >	Other
Private Member Functions
void	computeCounts ()
Private Attributes
int	counts [11]
bool	computed

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Detailed Description

keeps count of 10 different AS types

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Constructor & Destructor Documentation

ASCountKeeper::ASCountKeeper

(

)

[inline]

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Member Function Documentation

void ASCountKeeper::addCE	(	int	i1,
		int	i2,
		int	i3,
		int	i4
	)

References CE.

Referenced by skipExon(), and skipExonVariant().

void ASCountKeeper::addCE	(	int	i1,
		int	i2,
		int	i3,
		int	i4,
		int	i5,
		char	aord
	)

References CE_AA, and CE_AD.

void ASCountKeeper::addCE	(	int	i1,
		int	i2,
		int	i3,
		int	i4,
		int	i5,
		int	i6
	)

References CE_ADAA.

void ASCountKeeper::addCE

(

const vector< int > &

points

)

[inline]

References CE.

void ASCountKeeper::addCE	(	const vector< int > &	points,
		char	aord
	)			[inline]

References CE_AA, and CE_AD.

void ASCountKeeper::addME	(	int	i1,
		int	i2,
		int	i3,
		int	i4,
		int	i5,
		int	i6
	)

References ME.

Referenced by mutualExclusive().

void ASCountKeeper::addAD	(	int	i1,
		int	i2,
		int	i3
	)

References AD.

Referenced by alternativeDonor().

void ASCountKeeper::addAA	(	int	i1,
		int	i2,
		int	i3
	)

References AA.

Referenced by alternativeAcceptor().

void ASCountKeeper::addOther

(

const vector< int > &

points

)

[inline]

Referenced by skipExon().

void ASCountKeeper::accumulate

(

int

astc[11]

)

References computeCounts(), computed, and counts.

Referenced by statAStype().

void ASCountKeeper::computeCounts

(

)

[private]

References AA, AD, ADAA, CE, CE_AA, CE_AD, CE_ADAA, CEorAAend, computed, counts, IR, ME, and Other.

Referenced by accumulate().

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Member Data Documentation

set<vector<int> > ASCountKeeper::AD

keep unique count of each events. Each event can be represented by a vector of intergers depends on the type of events

Referenced by addAD(), and computeCounts().

set<vector<int> > ASCountKeeper::AA

Referenced by addAA(), and computeCounts().

set<vector<int> > ASCountKeeper::CE

Referenced by addCE(), and computeCounts().

set<vector<int> > ASCountKeeper::CE_AD

Referenced by addCE(), and computeCounts().

set<vector<int> > ASCountKeeper::CE_AA

Referenced by addCE(), and computeCounts().

set<vector<int> > ASCountKeeper::CE_ADAA

Referenced by addCE(), and computeCounts().

set<vector<int> > ASCountKeeper::IR

Referenced by computeCounts(), and retainIntron().

set<vector<int> > ASCountKeeper::ADAA

Referenced by bothADAA(), and computeCounts().

set<vector<int> > ASCountKeeper::CEorAAend

Referenced by CEorAA(), and computeCounts().

set<vector<int> > ASCountKeeper::ME

Referenced by addME(), and computeCounts().

set<vector<int> > ASCountKeeper::Other

Referenced by computeCounts().

int ASCountKeeper::counts[11] [private]

Referenced by accumulate(), and computeCounts().

bool ASCountKeeper::computed [private]

Referenced by accumulate(), and computeCounts().

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The documentation for this class was generated from the following file:

• range/astyping.cpp