Alnview Class Reference

List of all members.

Public Member Functions
	Alnview ()
	Alnview (int numseq)
void	showRaw ()
String	namesToString ()
String	toString ()
void	readFile (String file) throws IOException
Static Public Member Functions
static void	main (String[] argv)
Static Package Attributes
static JFrame	mwd = new JFrame("Sequence Alignment Viewer")
Private Attributes
Vector	alnedseq
Vector	seqNames
String	format = "Clustal"
JComponent	jc = new JComponent()

---

Constructor & Destructor Documentation

Alnview::Alnview

(

)

[inline]

References alnedseq, and seqNames.

Referenced by main().

Alnview::Alnview

(

int

numseq

)

[inline]

References alnedseq, and seqNames.

---

Member Function Documentation

void Alnview::showRaw

(

)

[inline]

References alnedseq, and seqNames.

String Alnview::namesToString

(

)

[inline]

References append(), and seqNames.

Referenced by main().

String Alnview::toString

(

)

[inline]

References alnedseq, and append().

Referenced by main().

void Alnview::readFile

(

String

file

)

throws IOException [inline]

reading from sequence alignment files such as Clustalw

References alnedseq, append(), format, and seqNames.

Referenced by main().

static void Alnview::main

(

String[]

argv

)

[inline, static]

References Alnview(), mwd, name, namesToString(), readFile(), and toString().

---

Member Data Documentation

Vector Alnview::alnedseq [private]

Referenced by Alnview(), readFile(), showRaw(), and toString().

Vector Alnview::seqNames [private]

Referenced by Alnview(), namesToString(), readFile(), and showRaw().

String Alnview::format = "Clustal" [private]

Referenced by readFile().

JFrame Alnview::mwd = new JFrame("Sequence Alignment Viewer") [static, package]

Referenced by main().

JComponent Alnview::jc = new JComponent() [private]

---

The documentation for this class was generated from the following file:

• alnview/Alnview.java