Blmodel Member List

This is the complete list of members for Blmodel, including all inherited members.

asDelimitedString(const char delimiter[]=",") const	Match	[inline]
Blmodel(const string &q, const string &t, int fp, int ql, int tl, int qb, int qe, int tb, int te, int ex, double sc, double ide, double qc, float ol)	Blmodel	[inline]
Blmodel(const mysqlpp::Row &r)	Blmodel	[inline]
combine(const Match &m)	Match	[inline]
contain(const Match &m, bool sameDirection=true) const	Match	[inline]
coveredBy(const Match &m, bool sd=true, float fraction=0.8) const	Match
fpnum	Blmodel	[private]
getExonNum() const	Blmodel	[inline]
getExpectedTargetRange(int ease=500, double cr=4.1) const	Blmodel
getFpnum() const	Blmodel	[inline]
getNormScore() const	Blmodel	[inline]
getQid() const	Blmodel	[inline]
getScore() const	Blmodel	[inline]
getTid() const	Blmodel	[inline]
iden	Blmodel	[private]
isNull() const	Match	[inline]
Match()	Match	[inline]
Match(const Match &m)	Match	[inline]
Match(int qb, int qe, int tb, int te)	Match	[inline]
numex	Blmodel	[private]
olp	Blmodel	[private]
onMinus() const	Match	[inline]
onPlus() const	Match	[inline]
operator<(const Match &m) const	Match
operator<<(ostream &ous, const Blmodel &bm)	Blmodel	[friend]
Match::operator<<(ostream &ous, const Match &m)	Match	[friend]
operator=(const Match &m)	Match
operator==(const Match &m) const	Match	[inline]
output(ostream &ous, const char delimiter[]="\t") const	Match	[inline]
overlap(const Match &m, bool sd=true) const	Match	[inline]
overlay(const Match &m) const	Match	[inline]
overlayFraction(const Match &m) const	Match	[inline]
plusContain(const Match &m) const	Match	[inline]
q	Match	[protected]
qcontain(const Match &m, bool sd=true) const	Match	[inline]
qcov	Blmodel	[private]
qid	Blmodel	[private]
qlen	Blmodel	[private]
qoverlap(const Match &m, bool sameDirection=true) const	Match	[inline]
qplustminusContain(const Match &m) const	Match	[inline]
queryBegin() const	Match	[inline]
queryDistance(const Match &m)	Match	[inline]
queryEnd() const	Match	[inline]
queryHasStart() const	Blmodel	[inline]
queryHasStop() const	Blmodel	[inline]
queryLength() const	Blmodel	[inline]
queryOverlapFraction(const Match &m, bool sameDirection=true) const	Match
queryOverlapFractionMax(const Match &m, bool sameDirection=true) const	Match	[inline]
queryOverlapFractionMerge(const Match &m, bool sameDirection=true) const	Match	[inline]
queryRange() const	Match	[inline]
score	Blmodel	[private]
set(int qb, int qe, int tb, int te)	Match	[inline]
setNull()	Match	[inline]
setTargetRange(int b, int e)	Match	[inline]
similar(const Match &m, bool sd=true) const	Match	[inline]
t	Match	[protected]
targetBegin() const	Match	[inline]
targetDirection() const	Match	[inline]
targetDistance(const Match &m)	Match	[inline]
targetEnd() const	Match	[inline]
targetLength() const	Blmodel	[inline]
targetOnMinus() const	Match	[inline]
targetOnPlus() const	Match	[inline]
targetOverlapFraction(const Match &m, bool sameDirection=true) const	Match
targetOverlapFractionMax(const Match &m, bool sameDirection=true) const	Match	[inline]
targetOverlapFractionMerge(const Match &m, bool sameDirection=true) const	Match	[inline]
targetRange() const	Match	[inline]
tcontain(const Match &m, bool sd=true) const	Match	[inline]
tid	Blmodel	[private]
tlen	Blmodel	[private]
toverlap(const Match &m, bool sameDirection=true) const	Match	[inline]
~Match()	Match	[inline]