Boxchain Member List

This is the complete list of members for Boxchain, including all inherited members.

avgIdentity() const	Boxchain
begin	Boxchain	[private]
Boxchain(Alignsegex *pe, const bioseq *xx, const bioseq *yy)	Boxchain
Boxchain()	Boxchain	[inline]
Boxchain(M8MatchEX *p)	Boxchain
Boxchain(const Boxchain &bc)	Boxchain
boxes	Boxchain	[private]
buildAlignment(Dynaln &aln)	Boxchain
buttom	Boxchain	[private]
chlen	Boxchain	[private]
detailOutput(ostream &ous, const string &qid, const string &tid, const int &id, const char dl[]="\t") const	Boxchain
direction() const	Boxchain	[inline]
end	Boxchain	[private]
first() const	Boxchain	[inline]
first()	Boxchain	[inline]
getScore() const	Boxchain	[inline]
getXEnd() const	Boxchain	[inline]
getXStart() const	Boxchain	[inline]
getYEnd() const	Boxchain	[inline]
getYStart() const	Boxchain	[inline]
iden	Boxchain	[mutable, private]
last() const	Boxchain	[inline]
last()	Boxchain	[inline]
maxScore() const	Boxchain	[inline]
middle	Boxchain	[private]
numberHSP() const	Boxchain	[inline]
numMatch() const	Boxchain	[inline]
operator<<(ostream &ous, const Boxchain &bc)	Boxchain	[friend]
operator=(const Boxchain &bc)	Boxchain
printAlign(ostream &ous, const int width=70)	Boxchain
qolp	Boxchain	[mutable, private]
queryBegin() const	Boxchain	[inline]
queryCovered() const	Boxchain	[inline]
queryEnd() const	Boxchain	[inline]
queryOverlap() const	Boxchain
querySeqCovered() const	Boxchain
show(ostream &ous) const	Boxchain
summaryOutput(ostream &ous, const char dl[]="\t") const	Boxchain
sumscore	Boxchain	[private]
sumScore() const	Boxchain	[inline]
targetBegin() const	Boxchain	[inline]
targetEnd() const	Boxchain	[inline]
top	Boxchain	[private]
xseq	Boxchain	[private]
yseq	Boxchain	[private]
~Boxchain()	Boxchain
~Boxchain()	Boxchain