ChainAvgrange Class Reference

#include <ChainAvgrange.h>

List of all members.

Public Types
typedef vector< avgrange * > ::iterator	chain_iterator
Public Member Functions
	ChainAvgrange (const string &id, int len)
	~ChainAvgrange ()
void	addRange (const alnrange *r)
int	size () const
void	dbrows (list< string > &rows, const char dlm[]=",") const
bool	isChimera () const
int	checkSplits (list< string > &tablerows, ostream &ous) const
Private Attributes
string	seqid
int	seqlen
vector< avgrange * >	chain
Friends
ostream &	operator<< (ostream &ous, const ChainAvgrange &ar)

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Member Typedef Documentation

typedef vector<avgrange*>::iterator ChainAvgrange::chain_iterator

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Constructor & Destructor Documentation

ChainAvgrange::ChainAvgrange	(	const string &	id,
		int	len
	)			[inline]

ChainAvgrange::~ChainAvgrange

(

)

References chain.

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Member Function Documentation

void ChainAvgrange::addRange

(

const alnrange *

r

)

r will be saved into this object This object will be responsible to delete the pointer.

References chain, and del().

Referenced by checkchimera(), and checksplit().

int ChainAvgrange::size

(

)

const [inline]

References chain.

void ChainAvgrange::dbrows	(	list< string > &	rows,
		const char	dlm[] = ","
	)			const

References chain, itos(), seqid, and seqlen.

Referenced by checkchimera().

bool ChainAvgrange::isChimera

(

)

const [inline]

References chain.

Referenced by checkchimera(), and checksplit().

int ChainAvgrange::checkSplits	(	list< string > &	tablerows,
		ostream &	ous
	)			const

References chain, SplitResult::empty(), SplitResult::outputRow(), seqid, seqlen, and SplitResult::setGuide().

Referenced by checksplit().

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Friends And Related Function Documentation

ostream& operator<<	(	ostream &	ous,
		const ChainAvgrange &	ar
	)			[friend]

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Member Data Documentation

string ChainAvgrange::seqid [private]

Referenced by checkSplits(), dbrows(), and operator<<().

int ChainAvgrange::seqlen [private]

Referenced by checkSplits(), dbrows(), and operator<<().

vector<avgrange*> ChainAvgrange::chain [private]

Referenced by addRange(), checkSplits(), dbrows(), isChimera(), operator<<(), size(), and ~ChainAvgrange().

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The documentation for this class was generated from the following files:

• cluster/ChainAvgrange.h
• cluster/ChainAvgrange.cpp