ESTCombined Class Reference

#include <ESTCombined.h>

List of all members.

Public Member Functions
	ESTCombined ()
	ESTCombined (const Noschain &seg, int count, const string &chrom)
void	write (ostream &mod, ostream &exon, ostream &track, char sep='\t') const
Static Public Attributes
static int	id = 1
static int	exonid = 1
static const char	modelheader [] = "modelid\tgenomicid\tbegin\tend\tnumest\tnumexon\texonLength\texons"
static const char	exonheader [] = "exonid\tmodelid\texstart\texfinish"
static const char	trackheader [] = "id\tname\tchrom\tstrand\tstart\tend\tsfCount\tsfStarts\tsfEnds"
Private Attributes
const Noschain *	ex
string	gid
int	numest

---

Detailed Description

this is an temp object used by combest to format output

---

Constructor & Destructor Documentation

ESTCombined::ESTCombined

(

)

[inline]

ESTCombined::ESTCombined	(	const Noschain &	seg,
		int	count,
		const string &	chrom
	)			[inline]

---

Member Function Documentation

void ESTCombined::write	(	ostream &	mod,
		ostream &	exon,
		ostream &	track,
		char	sep = '\t'
	)			const

References Range::begin(), Range::end(), ex, exonid, Noschain::exonLength(), gid, id, Noschain::jgiformat(), Noschain::numberOfRanges(), numest, and Noschain::toString().

---

Member Data Documentation

int ESTCombined::id = 1 [static]

Referenced by write().

int ESTCombined::exonid = 1 [static]

Referenced by write().

const char ESTCombined::modelheader = "modelid\tgenomicid\tbegin\tend\tnumest\tnumexon\texonLength\texons" [static]

const char ESTCombined::exonheader = "exonid\tmodelid\texstart\texfinish" [static]

const char ESTCombined::trackheader = "id\tname\tchrom\tstrand\tstart\tend\tsfCount\tsfStarts\tsfEnds" [static]

const Noschain* ESTCombined::ex [private]

Referenced by write().

string ESTCombined::gid [private]

Referenced by write().

int ESTCombined::numest [private]

Referenced by write().

---

The documentation for this class was generated from the following files:

• range/ESTCombined.h
• range/ESTCombined.cpp