FPGModel Member List

This is the complete list of members for FPGModel, including all inherited members.

addExon(int bb, int ee)	GModel< fpkey >
addExon(int bb, int ee)	GModel< fpkey >
avgiden	FPGModel	[private]
begin() const	GModel< fpkey >	[inline]
begin() const	GModel< fpkey >	[inline]
bound() const	GModel< fpkey >	[inline]
bound() const	GModel< fpkey >	[inline]
contain(const GModel &mm) const	GModel< fpkey >
contain(const GModel &mm) const	GModel< fpkey >
containIntron(const GModel &mm) const	GModel< fpkey >
containIntron(const GModel &mm) const	GModel< fpkey >
cover(const FPGModel &mm) const	FPGModel
cover(const FPGModel &mm) const	FPGModel
direction() const	GModel< fpkey >
direction() const	GModel< fpkey >
end() const	GModel< fpkey >	[inline]
end() const	GModel< fpkey >	[inline]
endsContain(const GModel &mm) const	GModel< fpkey >
endsContain(const GModel &mm) const	GModel< fpkey >
exons	GModel< fpkey >	[protected]
finish() const	GModel< fpkey >	[inline]
finish() const	GModel< fpkey >	[inline]
FPGModel(const string &qid, const string &tid, int fpnum, int ql, int tl, int qb, int qe, int tb, int te, int nx, double ss, double ai, double qc, double so)	FPGModel	[inline]
FPGModel(const string &qid, const string &tid, int fpnum, int ql, int tl, int qb, int qe, int tb, int te, int nx, double ss, double ai, double qc, double so)	FPGModel	[inline]
getAvgiden() const	FPGModel	[inline]
getAvgiden() const	FPGModel	[inline]
getId() const	GModel< fpkey >	[inline]
getId() const	GModel< fpkey >	[inline]
getNormSumscore() const	FPGModel	[inline]
getNormSumscore() const	FPGModel	[inline]
getSumscore() const	FPGModel	[inline]
getSumscore() const	FPGModel	[inline]
GModel()	GModel< fpkey >	[inline]
GModel(const fpkey &name)	GModel< fpkey >	[inline]
GModel()	GModel< fpkey >	[inline]
GModel(const fpkey &name)	GModel< fpkey >	[inline]
id	GModel< fpkey >	[protected]
inside(pair< int, int > r) const	GModel< fpkey >	[inline]
inside(pair< int, int > r) const	GModel< fpkey >	[inline]
intn	GModel< fpkey >	[mutable, protected]
intronLongerThan(const int L) const	GModel< fpkey >
intronLongerThan(const int L) const	GModel< fpkey >
introns() const	GModel< fpkey >
introns() const	GModel< fpkey >
intronsBuilt	GModel< fpkey >	[mutable, protected]
maxIntronLength() const	GModel< fpkey >
maxIntronLength() const	GModel< fpkey >
numexon	FPGModel	[private]
numExons() const	GModel< fpkey >	[inline]
numExons() const	GModel< fpkey >	[inline]
operator(ostream &os, const GModel< fpkey > &mm)	GModel< fpkey >	[friend]
operator(ostream &os, const GModel< fpkey > &mm)	GModel< fpkey >	[friend]
operator<<(ostream &ous, const FPGModel &mm)	FPGModel	[friend]
operator<<(ostream &ous, const FPGModel &mm)	FPGModel	[friend]
operator==(const GModel &mm) const	GModel< fpkey >
operator==(const GModel &mm) const	GModel< fpkey >
overlap(const GModel< fpkey > &mm) const	GModel< fpkey >
overlap(const GModel< fpkey > &mm) const	GModel< fpkey >
overlapBoth(const GModel< fpkey > &mm) const	GModel< fpkey >	[inline]
overlapBoth(const GModel< fpkey > &mm) const	GModel< fpkey >	[inline]
overlapOpposite(const GModel< fpkey > &mm) const	GModel< fpkey >	[inline]
overlapOpposite(const GModel< fpkey > &mm) const	GModel< fpkey >	[inline]
qbegin	FPGModel	[private]
qcov	FPGModel	[private]
qend	FPGModel	[private]
qlen	FPGModel	[private]
similar(const FPGModel &mm, float fr=0.15) const	FPGModel
similar(const FPGModel &mm, float fr=0.15) const	FPGModel
size() const	GModel< fpkey >	[inline]
size() const	GModel< fpkey >	[inline]
start() const	GModel< fpkey >	[inline]
start() const	GModel< fpkey >	[inline]
sumoverlap	FPGModel	[private]
sumscore	FPGModel	[private]
tbegin	FPGModel	[private]
tend	FPGModel	[private]
tlen	FPGModel	[private]