Genefeature Class Reference

#include <gfeature.h>

Inheritance diagram for Genefeature:

List of all members.

Public Member Functions
	Genefeature ()
	Genefeature (vector< string > &loc, const string &ftype, map< string, string > *qls) throw (InvalidQualifier)
void	addCoding (vector< Gfeature * > &m, vector< Gfeature * > &c)
const string &	proteinid () const
const string &	product () const
bool	deflineBetter (const string &oldef) const
ostream &	writeGBTable (ostream &ous) const
int	numberOfCoding () const
Private Attributes
vector< Gfeature * >	mRNA
vector< Gfeature * >	CDS

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Constructor & Destructor Documentation

Genefeature::Genefeature

(

)

[inline]

Genefeature::Genefeature	(	vector< string > &	loc,
		const string &	ftype,
		map< string, string > *	qls
	)			throw (InvalidQualifier) [inline]

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Member Function Documentation

void Genefeature::addCoding	(	vector< Gfeature * > &	m,
		vector< Gfeature * > &	c
	)			[inline]

References CDS.

const string& Genefeature::proteinid

(

)

const [inline]

References CDS.

const string& Genefeature::product

(

)

const [inline]

References CDS.

bool Genefeature::deflineBetter

(

const string &

oldef

)

const

defline from first CDS is better than oldef

ostream & Genefeature::writeGBTable

(

ostream &

ous

)

const

int Genefeature::numberOfCoding

(

)

const [inline]

References CDS.

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Member Data Documentation

vector<Gfeature*> Genefeature::mRNA [private]

vector<Gfeature*> Genefeature::CDS [private]

Referenced by addCoding(), numberOfCoding(), product(), and proteinid().

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The documentation for this class was generated from the following files:

• annotation/gfeature.h
• annotation/gfeature.cpp