HalfAlignInterval Member List

This is the complete list of members for HalfAlignInterval, including all inherited members.

after(const Interval &iv) const	Interval	[inline]
alnlen	HalfAlignInterval	[private]
before(const Interval &iv) const	Interval	[inline]
begin() const	Interval	[inline]
cov	HalfAlignInterval	[private]
end() const	Interval	[inline]
getAlnlen() const	HalfAlignInterval	[inline]
getBegin() const	Interval	[inline]
getCov() const	HalfAlignInterval	[inline]
getEnd() const	Interval	[inline]
getIdentical() const	HalfAlignInterval	[inline]
getIdentity() const	HalfAlignInterval	[inline]
HalfAlignInterval(const int bb, const int ee, int iden, int alen, float cc)	HalfAlignInterval	[inline]
HalfAlignInterval(const HalfAlignInterval &i)	HalfAlignInterval	[inline]
identical	HalfAlignInterval	[private]
Interval()	Interval	[inline]
Interval(const int bb, const int ee)	Interval	[inline]
Interval(const Interval &iv)	Interval	[inline]
Interval(const string &str)	Interval
isNull() const	Interval	[inline]
length() const	Interval	[inline]
less(const Interval &iv) const	Interval	[inline]
merge(Interval *i, const int cut=5)	Interval	[virtual]
operator<(const Interval &iv) const	Interval	[inline]
operator<<(ostream &ous, const Interval &iv)	Interval	[friend]
overlap(const Interval &i) const	Interval
overlap(const int bb, const int ee) const	Interval
set(const Interval &iv)	Interval	[inline]
setBegin(const int bb)	Interval	[inline]
setEnd(const int ee)	Interval	[inline]
size() const	Interval	[inline, virtual]
toDelimitedString(const string &dl="\t") const	Interval	[virtual]
~Interval()	Interval	[inline, virtual]