| _first | M8MatchChain | [private] |
| _last | M8MatchChain | [private] |
| add(M8Match *m) | M8MatchChain | |
| avgIdentity() const | M8MatchChain | [inline] |
| chain | M8MatchChain | [private] |
| direction() const | M8MatchChain | |
| getQueryBegin() const | M8MatchChain | |
| getQueryEnd() const | M8MatchChain | |
| getTargetBegin() const | M8MatchChain | |
| getTargetEnd() const | M8MatchChain | |
| hasFirst() const | M8MatchChain | [inline] |
| hasLast() const | M8MatchChain | [inline] |
| M8MatchChain() | M8MatchChain | [inline] |
| M8MatchChain(M8Match *m) | M8MatchChain | [inline] |
| nofirst() | M8MatchChain | [inline] |
| nolast() | M8MatchChain | [inline] |
| operator<<(ostream &ous, const M8MatchChain &c) | M8MatchChain | [friend] |
| output(ostream &ous, char delimiter[]="\t") const | M8MatchChain | |
| qchain | M8MatchChain | [private] |
| queryLength() const | M8MatchChain | [inline] |
| queryOverlap() const | M8MatchChain | [inline] |
| size() const | M8MatchChain | [inline] |
| sumaln | M8MatchChain | [private] |
| sumiden | M8MatchChain | [private] |
| sumscore | M8MatchChain | [private] |
| sumScore() const | M8MatchChain | [inline] |
| Tblastn class | M8MatchChain | [friend] |
1.5.6