Model Class Reference

#include <Model.h>

List of all members.

Public Member Functions
	Model ()
	Model (const string &name)
void	addExon (int bb, int ee) throw (ExondirectionError)
bool	operator== (const Model &mm) const
char	direction () const
pair< int, int >	bound () const
bool	contain (const Model &mm) const
bool	containIntron (const Model &mm) const
bool	endsContain (const Model &mm) const
int	numExons () const
int	start () const
int	end () const
vector< int >	introns () const
const string &	getId () const
	Model ()
	Model (const string &name)
void	addExon (int bb, int ee) throw (ExondirectionError)
bool	operator== (const Model &mm) const
char	direction () const
pair< int, int >	bound () const
bool	contain (const Model &mm) const
bool	containIntron (const Model &mm) const
bool	endsContain (const Model &mm) const
int	numExons () const
int	start () const
int	end () const
vector< int >	introns () const
const string &	getId () const
Private Attributes
string	id
list< pair< int, int > >	exons
Friends
ostream &	operator<< (ostream &ous, const Model &mm)
ostream &	operator<< (ostream &ous, const Model &mm)

---

Constructor & Destructor Documentation

Model::Model

(

)

[inline]

Model::Model

(

const string &

name

)

[inline]

Model::Model

(

)

[inline]

Model::Model

(

const string &

name

)

[inline]

---

Member Function Documentation

void Model::addExon	(	int	bb,
		int	ee
	)			throw (ExondirectionError)

Referenced by filterCDS().

bool Model::operator==

(

const Model &

mm

)

const

References exons.

char Model::direction

(

)

const

References exons.

Referenced by contain(), endsContain(), and introns().

pair<int,int> Model::bound

(

)

const [inline]

References exons.

bool Model::contain

(

const Model &

mm

)

const

References direction(), end(), endsContain(), exons, introns(), numExons(), and start().

bool Model::containIntron

(

const Model &

mm

)

const

References introns(), and numExons().

bool Model::endsContain

(

const Model &

mm

)

const

References direction(), end(), and start().

Referenced by contain().

int Model::numExons

(

)

const [inline]

References exons.

Referenced by contain(), containIntron(), and introns().

int Model::start

(

)

const [inline]

References exons.

Referenced by contain(), and endsContain().

int Model::end

(

)

const [inline]

References exons.

Referenced by contain(), and endsContain().

vector< int > Model::introns

(

)

const

References direction(), exons, and numExons().

Referenced by contain(), and containIntron().

const string& Model::getId

(

)

const [inline]

References id.

void Model::addExon	(	int	bb,
		int	ee
	)			throw (ExondirectionError)

bool Model::operator==

(

const Model &

mm

)

const

char Model::direction

(

)

const

pair<int,int> Model::bound

(

)

const [inline]

References exons.

bool Model::contain

(

const Model &

mm

)

const

bool Model::containIntron

(

const Model &

mm

)

const

bool Model::endsContain

(

const Model &

mm

)

const

int Model::numExons

(

)

const [inline]

References exons.

int Model::start

(

)

const [inline]

References exons.

int Model::end

(

)

const [inline]

References exons.

vector<int> Model::introns

(

)

const

const string& Model::getId

(

)

const [inline]

References id.

---

Friends And Related Function Documentation

ostream& operator<<	(	ostream &	ous,
		const Model &	mm
	)			[friend]

ostream& operator<<	(	ostream &	ous,
		const Model &	mm
	)			[friend]

---

Member Data Documentation

string Model::id [private]

Referenced by getId(), and operator<<().

list< pair< int, int > > Model::exons [private]

Referenced by bound(), contain(), direction(), end(), introns(), numExons(), operator<<(), operator==(), and start().

---

The documentation for this class was generated from the following files:

• bioseq/Model.h
• util/Model.h
• bioseq/Model.cpp