ModmRNAvalidate Class Reference

List of all members.

Public Member Functions
	ModmRNAvalidate ()
	ModmRNAvalidate (String h, int p, String u, String pw)
Static Public Member Functions
static void	main (String[] args)
Private Attributes
Ace	hgdb
String	query = "select model::s, len, cDNA::s->corresponding_cDNA, s->corresponding_cDNA->DNA[2] from s in class sequence, len in (sum(select s->source_exons[2]) - sum (select s->source_exons[1]) + count(select s->source_exons)) where exists_tag s->corresponding_cDNA and len != s->corresponding_cDNA->DNA[2]"

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Constructor & Destructor Documentation

ModmRNAvalidate::ModmRNAvalidate

(

)

[inline]

References hgdb.

Referenced by main().

ModmRNAvalidate::ModmRNAvalidate	(	String	h,
		int	p,
		String	u,
		String	pw
	)			[inline]

References hgdb.

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Member Function Documentation

static void ModmRNAvalidate::main

(

String[]

args

)

[inline, static]

References hgdb, ModmRNAvalidate(), and query.

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Member Data Documentation

Ace ModmRNAvalidate::hgdb [private]

Referenced by main(), and ModmRNAvalidate().

String ModmRNAvalidate::query = "select model::s, len, cDNA::s->corresponding_cDNA, s->corresponding_cDNA->DNA[2] from s in class sequence, len in (sum(select s->source_exons[2]) - sum (select s->source_exons[1]) + count(select s->source_exons)) where exists_tag s->corresponding_cDNA and len != s->corresponding_cDNA->DNA[2]" [private]

right now AQL has a bug that prevented me from selecting the length of the DNA sequence. I have to iterate throught the whole database to get this number.

Referenced by main().

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The documentation for this class was generated from the following file:

• seqana/ModmRNAvalidate.java