OutsideGenomicSequence Class Reference

#include <RNAModel.h>

Inherits std::exception.

List of all members.

Public Member Functions
	OutsideGenomicSequence (const string &msg) throw ()
	OutsideGenomicSequence () throw ()
	~OutsideGenomicSequence () throw ()
const char *	what () const throw ()
Private Attributes
string	message

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Detailed Description

This is a more flexible collection of classes for dealing with gene models on genomic sequences. Using the base classes in this file we can derive more specific classes for other types of RNA species. This is the first version and still needs improvement.

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Constructor & Destructor Documentation

OutsideGenomicSequence::OutsideGenomicSequence

(

const string &

msg

)

throw () [inline]

OutsideGenomicSequence::OutsideGenomicSequence

(

)

throw () [inline]

OutsideGenomicSequence::~OutsideGenomicSequence

(

)

throw () [inline]

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Member Function Documentation

const char* OutsideGenomicSequence::what

(

)

const throw () [inline]

References message.

Referenced by ESTAssembly::breakPrefixModel(), ESTAssembly::breakSuffixModel(), mRNAModel::growCDS3Prime(), and mRNAModel::setRNACDS().

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Member Data Documentation

string OutsideGenomicSequence::message [private]

Referenced by what().

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The documentation for this class was generated from the following file:

• range/RNAModel.h