RangeChain Member List

This is the complete list of members for RangeChain, including all inherited members.

add(const Range &r, bool sd=true)	RangeChain
after(const Range &r) const	Range
asDelimitedString(const char delimiter[]=",") const	Range
asDelimitedString(const char delimiter=',') const	Range
b	Range	[protected]
before(const Range &r) const	Range
begin() const	RangeChain	[inline]
beginUpdate(int len)	Range	[inline]
chain	RangeChain	[protected]
combine(const Range &r)	Range
compare(const Range &r) const	Range
compare(const Range *r) const	Range	[inline]
compareByDirection(const Range &r) const	Range
compareDirectional(const Range &r) const	Range
const_iterator typedef	RangeChain
contain(const Range &r, bool sameDirection=true) const	Range
contain(int p) const	Range
copyReverse() const	Range	[inline]
copyShrinkBothEnds(int del) const	Range
direction() const	RangeChain
directionalLess(const Range &r) const	Range	[inline]
distance(const Range &r) const	Range
e	Range	[protected]
empty() const	Range	[inline]
end() const	RangeChain	[inline]
endUpdate(int len)	Range	[inline]
exonLength() const	RangeChain	[inline]
exonMerge(const RangeChain &rc)	RangeChain
exonOverlap(const RangeChain &rc) const	RangeChain
forceFuse(const Range &r)	Range
fuse(const Range &r)	Range
getOverlap() const	RangeChain	[inline]
getReverse() const	Range	[inline]
greaterByDirection(const Range &r) const	Range	[inline]
greaterByDirection(const Range *r) const	Range	[inline]
greaterByDirection(int p) const	Range	[inline]
growEnd(int icr)	Range
high() const	Range	[inline]
inside(const Range &r) const	Range	[inline]
intronLength() const	RangeChain
isMinus() const	Range	[inline]
isNull() const	Range	[inline, virtual]
isPlus() const	Range	[inline]
isPoint() const	Range	[inline]
itbegin() const	RangeChain	[inline]
itend() const	RangeChain	[inline]
largerEnd() const	Range	[inline]
length() const	RangeChain
less(const Range &r) const	Range	[inline]
lessByDirection(const Range &r) const	Range
lessByDirection(const Range *r) const	Range
lessByDirection(int p, char direc='+') const	Range
low() const	Range	[inline]
margin	Range	[protected, static]
marginFraction	Range	[protected, static]
maxIntronLength() const	RangeChain
merge(const Range &r, bool sd=true)	Range
minusContain(const Range &r) const	Range
minusOverlap(const Range &r) const	Range
minusplusContain(const Range &r) const	Range
minusplusOverlap(const Range &r) const	Range
numberOfRanges() const	RangeChain	[inline]
operator!=(const Range &r) const	Range	[inline]
operator+(int c) const	Range	[inline]
operator+(int c, const Range &r)	Range	[friend]
operator+=(int c)	Range	[inline]
operator-(int c) const	Range	[inline]
operator-(int c, const Range &r)	Range	[friend]
operator-=(int c)	Range	[inline]
operator<(const Range &r) const	Range	[inline]
operator<<(ostream &ous, const RangeChain &rc)	RangeChain	[friend]
Range::operator<<(ostream &ous, const Range &r)	Range	[friend]
operator=(const RangeChain &rc)	RangeChain
Range::operator=(const Range &r)	Range
operator==(const Range &r) const	Range	[inline]
operator>(const Range &r) const	Range	[inline]
order()	RangeChain
outerLength() const	RangeChain
outerRange() const	RangeChain
output(ostream &ous, const char delimiter[]="\t") const	Range	[inline]
output(ostream &ous, char delim='\t') const	Range	[inline]
overlap(const Range &r, bool sameDirection=true) const	Range
overlapFraction(const Range &r, bool sd=true) const	Range
overlay(const Range &r) const	Range
overlayFraction(const Range &r) const	Range
plusContain(const Range &r) const	Range
plusminusContain(const Range &r) const	Range
plusminusOverlap(const Range &r) const	Range
plusOverlap(const Range &r) const	Range
Range()	Range	[inline]
Range(int begin, int end)	Range	[inline]
Range(pair< int, int > p)	Range	[inline]
Range(const Range &r)	Range	[inline]
Range(int p)	Range	[inline]
RangeChain()	RangeChain	[inline]
RangeChain(const RangeChain &ch)	RangeChain
RangeChain(const string &raw)	RangeChain
RangeChain(const Range &r)	RangeChain	[inline]
reverse()	Range	[inline]
sameDirection(const Range &r) const	Range
set(int be, int en)	Range	[inline]
set(const Range &r)	Range	[inline]
setBegin(int be)	Range	[inline]
setEnd(int en)	Range	[inline]
setMargin(const int mg)	Range	[inline, static]
setNull()	Range	[inline, virtual]
similar(const Range &r, bool sameDirection=true) const	Range
similar(const Range &r, const int marg=20, const float frac=0.1, bool sameDirection=true) const	Range
smallerEnd() const	Range	[inline]
sumLength() const	RangeChain
sumolp	RangeChain	[protected]
tableRows(ostream &ous, const string &prefix) const	RangeChain
topology(const Range &r) const	Range
~Range()	Range	[inline]
~RangeChain()	RangeChain