Refreader Class Reference

#include <Refreader.h>

List of all members.

Public Member Functions
	Refreader ()
	Refreader (const Refreader &ref)
Refreader &	operator= (const Refreader &ref)
void	clear ()
bool	next (istream &ins, string &ln)
Ref *	newRef () throw (gbreferr)
string	toString () const
Private Attributes
string	authors
string	consrtm
string	title
string	journal
int	medline
int	pubmed
string	remark
Friends
ostream &	operator<< (ostream &ou, const Refreader &ref)

---

Detailed Description

this class simply reads in the text fields without processing. The next methods reads in the next Reference from the flat file. The newRef() is a factory method that produce a Ref object with proper subclass type depending on the information provided in the flat file.

Check the vref.h class for proper definition of all subclasses of References.

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Constructor & Destructor Documentation

Refreader::Refreader

(

)

[inline]

this one is called to initialize the internal buffer for the first call

Refreader::Refreader

(

const Refreader &

ref

)

References authors, consrtm, journal, medline, pubmed, remark, and title.

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Member Function Documentation

Refreader & Refreader::operator=

(

const Refreader &

ref

)

References authors, consrtm, journal, medline, pubmed, remark, and title.

void Refreader::clear

(

)

References authors, consrtm, medline, pubmed, remark, and title.

Referenced by next().

bool Refreader::next	(	istream &	ins,
		string &	ln
	)

Simply reads in the next comple Reference object Since most author names are Last,F. and terminate the sentence with the same period. Occationaly it has institute as auther and it ends with the same period. I don't realy care about this now.

main reader method

References authors, clear(), consrtm, getf(), medline, pubmed, remark, title, and gbseq::VAL_START.

Referenced by gbseq::read().

Ref * Refreader::newRef

(

)

throw (gbreferr)

The factory method, acting as the virtual constructor In case of some poor reference, I will return 0

Produces a new Ref object, returns a pointer to a Ref object.

References Ref::addRemark(), authors, consrtm, dissect(), length, medline, pubmed, R, remark, Journal::setMedline(), Journal::setPubmed(), substr(), and title.

Referenced by gbseq::read().

string Refreader::toString

(

)

const

References authors, consrtm, medline, pubmed, remark, and title.

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Friends And Related Function Documentation

ostream& operator<<	(	ostream &	ou,
		const Refreader &	ref
	)			[friend]

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Member Data Documentation

string Refreader::authors [private]

Referenced by clear(), newRef(), next(), operator<<(), operator=(), Refreader(), and toString().

string Refreader::consrtm [private]

Referenced by clear(), newRef(), next(), operator<<(), operator=(), Refreader(), and toString().

string Refreader::title [private]

Referenced by clear(), newRef(), next(), operator<<(), operator=(), Refreader(), and toString().

string Refreader::journal [private]

Referenced by operator<<(), operator=(), and Refreader().

int Refreader::medline [private]

Referenced by clear(), newRef(), next(), operator<<(), operator=(), Refreader(), and toString().

int Refreader::pubmed [private]

Referenced by clear(), newRef(), next(), operator<<(), operator=(), Refreader(), and toString().

string Refreader::remark [private]

Referenced by clear(), newRef(), next(), operator<<(), operator=(), Refreader(), and toString().

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The documentation for this class was generated from the following files:

• seqconv/gbtoace/Refreader.h
• seqconv/gbtoace/Refreader.cpp