Tblastnmy Class Reference

#include <Tblastnmy.h>

Inheritance diagram for Tblastnmy:

List of all members.

Public Member Functions
	Tblastnmy ()
	Tblastnmy (const Tblastnmy &t)
	Tblastnmy (const string &qq, const string &tt, int ql, int tl)
void	addMatch (const mysqlpp::Row &arow)
	Tblastnmy ()
	Tblastnmy (const Tblastnmy &t)
	Tblastnmy (const string &qq, const string &tt, int ql, int tl)
void	addMatch (const mysqlpp::Row &arow)

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Detailed Description

overload the addMatch function for convinence The original class should not mingle with the mysql types

simple adaptor class to use mysql database table as input for the tblastn result. Alternative is to use file as input

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Constructor & Destructor Documentation

Tblastnmy::Tblastnmy

(

)

[inline]

Tblastnmy::Tblastnmy

(

const Tblastnmy &

t

)

[inline]

Tblastnmy::Tblastnmy	(	const string &	qq,
		const string &	tt,
		int	ql,
		int	tl
	)			[inline]

Tblastnmy::Tblastnmy

(

)

[inline]

Tblastnmy::Tblastnmy

(

const Tblastnmy &

t

)

[inline]

Tblastnmy::Tblastnmy	(	const string &	qq,
		const string &	tt,
		int	ql,
		int	tl
	)			[inline]

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Member Function Documentation

void Tblastnmy::addMatch

(

const mysqlpp::Row &

arow

)

[inline]

References Tblastn::addMatch().

void Tblastnmy::addMatch

(

const mysqlpp::Row &

arow

)

[inline]

References Tblastn::addMatch().

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The documentation for this class was generated from the following files:

• seqaln/Utility/pfog.cpp
• seqaln/Utility/Tblastnmy.h