TranscriptExon Class Reference

#include <TranscriptExon.h>

Inheritance diagram for TranscriptExon:

List of all members.

Public Member Functions
	TranscriptExon ()
	TranscriptExon (const string &exstr)
Protected Attributes
vector< Interval >	exons
Friends
ostream &	operator<< (ostream &ous, const TranscriptExon &exn)

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Detailed Description

This is a simple class to deal with JGI sfCDSTranscript column in the transcript table

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Constructor & Destructor Documentation

TranscriptExon::TranscriptExon

(

)

[inline]

TranscriptExon::TranscriptExon

(

const string &

exstr

)

input string should be like 1,122:123,135:136,188:189,236:237,322:323,830:831,1013

References exons.

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Friends And Related Function Documentation

ostream& operator<<	(	ostream &	ous,
		const TranscriptExon &	exn
	)			[friend]

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Member Data Documentation

vector<Interval> TranscriptExon::exons [protected]

Referenced by CDSExon::intronloc(), CDSExon::intronlocCDS(), operator<<(), and TranscriptExon().

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The documentation for this class was generated from the following files:

• range/TranscriptExon.h
• range/TranscriptExon.cpp