alignmentRunner Class Reference

List of all members.

Public Member Functions
	alignmentRunner (const vector< Alnrange > *p, const map< int, string > *q, const map< int, string > *t)
	alignmentRunner (const vector< Alnrange > &p, const map< int, string > &q, const map< int, string > &t)
void	operator() ()
int	getId () const
	alignmentRunner (int b, int e, const vector< pair< int, int > > *p, const map< int, string > *q, const map< int, string > *t)
	alignmentRunner (int b, int e, const vector< pair< int, int > > &p, const map< int, string > &q, const map< int, string > &t)
void	operator() ()
Static Public Member Functions
static void	releaseMemory ()
Private Attributes
const vector< Alnrange > *	pairs
const map< int, string > *	qprt
const map< int, string > *	tprt
int	id
int	idxb
int	idxe
const vector< pair< int, int > > *	pairs
Static Private Attributes
static mutex *	mtx = new mutex
static int	jobend = 0
static int	numjobs = 100
static const int	repeat = 28
static int	numobj = 0

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Constructor & Destructor Documentation

alignmentRunner::alignmentRunner	(	const vector< Alnrange > *	p,
		const map< int, string > *	q,
		const map< int, string > *	t
	)			[inline]

References numjobs, and pairs.

alignmentRunner::alignmentRunner	(	const vector< Alnrange > &	p,
		const map< int, string > &	q,
		const map< int, string > &	t
	)			[inline]

References numjobs, and pairs.

alignmentRunner::alignmentRunner	(	int	b,
		int	e,
		const vector< pair< int, int > > *	p,
		const map< int, string > *	q,
		const map< int, string > *	t
	)			[inline]

alignmentRunner::alignmentRunner	(	int	b,
		int	e,
		const vector< pair< int, int > > &	p,
		const map< int, string > &	q,
		const map< int, string > &	t
	)			[inline]

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Member Function Documentation

void alignmentRunner::operator()

(

)

References getId(), Dynaln::getIdentity(), idxb, idxe, io_mutex, itos(), jobend, mtx, numjobs, pairs, qprt, repeat, Dynaln::runglobal(), Alnrange::s1b, Alnrange::s1e, Alnrange::s2b, Alnrange::s2e, Alnrange::seq1id, Alnrange::seq2id, Dynaln::setSeq(), Dynaln::setseq(), and tprt.

int alignmentRunner::getId

(

)

const [inline]

References id.

Referenced by operator()().

static void alignmentRunner::releaseMemory

(

)

[inline, static]

References mtx.

Referenced by main().

void alignmentRunner::operator()

(

)

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Member Data Documentation

const vector<Alnrange>* alignmentRunner::pairs [private]

the start and end index of the pairs table

Referenced by alignmentRunner(), and operator()().

const map< int, string > * alignmentRunner::qprt [private]

Referenced by operator()().

const map< int, string > * alignmentRunner::tprt [private]

Referenced by operator()().

int alignmentRunner::id [private]

Referenced by getId().

mutex * alignmentRunner::mtx = new mutex [static, private]

Referenced by operator()(), and releaseMemory().

int alignmentRunner::jobend = 0 [static, private]

Referenced by operator()().

int alignmentRunner::numjobs = 100 [static, private]

Referenced by alignmentRunner(), and operator()().

const int alignmentRunner::repeat = 28 [static, private]

Referenced by operator()().

int alignmentRunner::numobj = 0 [static, private]

int alignmentRunner::idxb [private]

the start and end index of the pairs table

Referenced by operator()().

int alignmentRunner::idxe [private]

Referenced by operator()().

const vector<pair<int,int> >* alignmentRunner::pairs [private]

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The documentation for this class was generated from the following files:

• seqaln/src/dbaln_chimerarmsimp.cpp
• seqaln/src/dbaln_chimerathread.cpp