aln Member List

This is the complete list of members for aln, including all inherited members.

align(const char s1n[], const char s1str[], const char s2n[], const char s2str[])	aln
allocateMem()	aln	[private]
distrib_file1	aln	[private]
distrib_file2	aln	[private]
dyaln()	aln
freeTrace()	aln	[inline]
initParameter()	aln	[private]
io	aln	[private]
isSimple() const	aln
outputAln(FILE *ou=stdout)	aln
outputTab(ostream &os)	aln
results	aln	[private]
scoring	aln	[private]
seq1	aln	[private]
seq2	aln	[private]
setcsub(int cs)	aln	[inline]
setGapCost(int alpha, int beta)	aln
setMatrix(char m[])	aln	[inline]
setNaligns(int n)	aln	[inline]
setup()	aln
sortedFreq1	aln	[private]
sortedFreq2	aln	[private]
~dyaln()	aln