alnrange Member List

This is the complete list of members for alnrange, including all inherited members.

alnrange()	alnrange	[inline]
alnrange(const alnrange &r)	alnrange
alnrange(int b, int e, double s, double ng, double c)	alnrange	[inline]
asDelimitedString(char sep[]=",") const	alnrange	[virtual]
asTabedString() const	alnrange	[virtual]
begin	alnrange	[protected]
cov	alnrange	[protected]
end	alnrange	[protected]
essentialInfo() const	alnrange	[virtual]
fields()	alnrange	[static]
getBegin() const	alnrange	[inline]
getCov() const	alnrange	[inline]
getEnd() const	alnrange	[inline]
getNg() const	alnrange	[inline]
getScore() const	alnrange	[inline]
length() const	alnrange	[inline]
ngidentity	alnrange	[protected]
operator<<(ostream &ous, const alnrange &r)	alnrange	[friend]
operator=(const alnrange &r)	alnrange
overlap(const alnrange &r, const int margin)	alnrange
overlap(const alnrange &r)	alnrange
ovlpcut	alnrange	[protected, static]
ovlpfraction	alnrange	[protected, static]
score	alnrange	[protected]
setmargin(int olpcut, float olpfrac)	alnrange	[inline, static]
~alnrange()	alnrange	[inline, virtual]