dyaln Member List

This is the complete list of members for dyaln, including all inherited members.

align(const char s1n[], const char s1str[], const char s2n[], const char s2str[])	dyaln
allocateMem()	dyaln	[private]
distrib_file1	dyaln	[private]
distrib_file2	dyaln	[private]
dyaln()	dyaln
freeTrace()	dyaln	[inline]
initParameter()	dyaln	[private]
io	dyaln	[private]
isSimple(float &ms) const	dyaln
outputAln(FILE *ou=stdout)	dyaln
outputTab(ostream &os)	dyaln
outputTabPos(ostream &os)	dyaln
results	dyaln	[private]
scoring	dyaln	[private]
seq1	dyaln	[private]
seq2	dyaln	[private]
setcsub(int cs)	dyaln	[inline]
setGapCost(int alpha, int beta)	dyaln
setMatrix(char m[])	dyaln	[inline]
setNaligns(int n)	dyaln	[inline]
setup()	dyaln
sortedFreq1	dyaln	[private]
sortedFreq2	dyaln	[private]
~dyaln()	dyaln