Class Index

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A	DBInfo	group	Match	Relrow_eq1
accession	dbinfo	gstat	match	Relrow_eq1Lgcov
aceconnections	Dbstat	Gsubreader	MatchQueryLessThan	Relrow_eq1Matchlen
acedbinfo	dbtime	Gsubrecord	Matrix	Relrow_eq1Score
AceException	Dip	H	MD5	Relrow_eq1Smcov
Acenode	divstat	HalfAlignInterval	mgsaln	Relrow_eq2
Aceobj (acedb)	DNA	HalfAlignPile	Model	Relrow_less
Aceobj	DNANotFound	hash_node	ModelFactory	Relrow_lessLgcov
Aceobj::AceobjNode (acedb)	DRgreater	hatrees	ModmRNAvalidate	Relrow_lessMatchlen
Aceobj::DumpStore (acedb)	dseq	head	mRNA	Relrow_lessScore
aceparam	DumpCDSLoadFile	HeadNode	mRNAModel	Relrow_lessSmcov
afterMatchQuery	dumpClusterPrt	hit	mRNAModelCaiwe	Resrow
alignment	dumpClusterTitle	hit::end	mRNAModelLight	Result
alignmentRunner	dyaln	I	mRNAModelUpdate	RightDropoff
alignpos	Dynaln	idpair	msp	RNAModel
Alignseg	E	Inpress	Mydatabase	S
Alignsegex	edit	InputColumn	MysqlDBInfo	scorepair
aln	edit_script	inputend	N	SEQALN_CONSTANTS
Alnchain	edit_script_list	inputException	namedlocseg	SEQALN_IO
Alnchainid	ESTAssembly	instopres	NegativeCoverage	SEQALN_LSTRUCT
Alnparam	ESTAssemblyid	Intabcol	njtree	SEQALN_PROFILE
Alnrange	ESTCombined	Interval	node	SEQALN_PVALUE
alnrange	ESTModel	IntervalChain	Noschain	SEQALN_RESULTS
alnsummary	exon	IntervalPile	notlessMatchQueryBegin	SEQALN_SEQUENCE
Alnview	ExondirectionError	intnode	O	SEQALN_SIJ
Altranscript	expair	intron	Online	seqelem
AQLException	ExtractEnd	InvalidJGIModel	Orgload	seqinfo
argv_scores	F	InvalidModel	OutsideGenomicSequence	Seqrange
ASCountKeeper	featErr	InvalidQualifier	P	seqrslt
avgrange	featerr	InvalieInputFeature	parerr	ServerSocket
B	featLocErr	Invariant	parsererror	sim4_stats
Badinput	feature	J	Patent	sim4Args
beforeMatchQuery	Fetchaceprt	JGIModel	pepNotFound	SimpleSelect
bioseq	FitNgidentity	jinfo	PfogParameters	SNavgstd
bioseqexception	FPGModel	Journal	pgdbinfo	Socket
BlastParameter	fpkey	journal	pointers	SocketException
Blmodel	func	K	PointOutChain	Sourceprt
book	G	kzseq	pregcut	spliced
Book	gbdate	L	Progparam	SplitResult
Boxchain	gbdnaseq	Lale	ProgParam	stddev
C	gberr	LeftDropoff	ProgParameters	Subclparam
cadbc	gbprt	lessByChainDirection	protein	Submission
CDSExon	gbprtseq	lessByChainDirectionPtr	Protein	suml
CDSload	gbreferr	lessChainPtr	ProteinTable	T
ChainAvgrange	gbseq	lesschptr	prt	Tblastn
ClientSocket	gconst	lessGraphNodePtr	Q	Tblastnmy
clusmethod	gdiagnosis	lgraph	qualif	Thesis
cluster	Genefeature	Linkbox	R	time
Clusterdump	GeneModel	Linkmatch	Range	trainer
cmpMatchTbeginInt	genetics	lnode	RangeChain	TranscriptExon
cmpMatchTbeginIntPtr	GenModel	LoadCDSFromOneDB	rangePair	U
cmpMatchTendInt	gentree	loadpair	Rangewid	Unpublished
cmpMatchTendIntPtr	Gfeature	loadprt	ref	V
cmpQueryPtr	Gmapalnseg	locseg	Ref	Valence
cmpTargetDirectionalPtr	Gmapath	LSDynaln	Reference	ValidQualifier
cmpTargetPtr	Gmapres	ltAlignsegexBeginYPtr	reference	ValNode
codon	GModel	ltAlignsegexEndYPtr	refloc	version
compfirst	Graph	ltAlignsegYXlen	Refreader	vertexinfo
Conpos	Graphid	ltMatchQueryBeginPtr	Refwithty	W
Conseq	GraphNode	ltModptr	Region	WeatherPainter
coordinates	GReaderState	ltrie	region	WeatherWizard
Coverdepth	GReaderStateC	M	RegionInt	word
Cutoff	GReaderStateM	M8Match	RegionStr	wordList
D	GReaderStateS	M8MatchChain	Relmin	_
Date	greaterRangeLength	M8MatchEX	Relrow	_MSP
DateException

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