fpkey Class Reference

#include <FPGModel.h>

List of all members.

Public Member Functions
	fpkey (const string &q, const string &t, const int n)
bool	operator== (const fpkey &k) const
bool	operator< (const fpkey &k) const
bool	operator> (const fpkey &k) const
	fpkey (const string &q, const string &t, const int n)
bool	operator== (const fpkey &k) const
bool	operator< (const fpkey &k) const
bool	operator> (const fpkey &k) const
Public Attributes
string	qid
string	tid
int	fpnum
Friends
ostream &	operator<< (ostream &ous, const fpkey &k)
ostream &	operator<< (ostream &ous, const fpkey &k)

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Detailed Description

class: FPGModel foot-print gene model is an extension of GModel and a specialization of the class with fpkey.

This class add a few parameter from the footprint table that records identity, coverage, and score

This is used for Genewise pipeline and other programs the consolidate blastx results into concrete results.

class: FPGModel foot-print gene model is an extension of GModel and a specialization of the class with fpkey.

This class add a few parameter from the footprint table that records identity, coverage, and score

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Constructor & Destructor Documentation

fpkey::fpkey	(	const string &	q,
		const string &	t,
		const int	n
	)			[inline]

fpkey::fpkey	(	const string &	q,
		const string &	t,
		const int	n
	)			[inline]

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Member Function Documentation

bool fpkey::operator==

(

const fpkey &

k

)

const [inline]

References fpnum, qid, and tid.

bool fpkey::operator<

(

const fpkey &

k

)

const [inline]

References fpnum, qid, and tid.

bool fpkey::operator>

(

const fpkey &

k

)

const [inline]

bool fpkey::operator==

(

const fpkey &

k

)

const [inline]

References fpnum, qid, and tid.

bool fpkey::operator<

(

const fpkey &

k

)

const [inline]

References fpnum, qid, and tid.

bool fpkey::operator>

(

const fpkey &

k

)

const [inline]

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Friends And Related Function Documentation

ostream& operator<<	(	ostream &	ous,
		const fpkey &	k
	)			[friend]

ostream& operator<<	(	ostream &	ous,
		const fpkey &	k
	)			[friend]

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Member Data Documentation

string fpkey::qid

Referenced by operator<(), operator==(), and storeInFootprintKeyTable().

string fpkey::tid

Referenced by operator<(), operator==(), and storeInFootprintKeyTable().

int fpkey::fpnum

Referenced by operator<(), operator==(), and storeInFootprintKeyTable().

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The documentation for this class was generated from the following files:

• bioseq/FPGModel.h
• util/FPGModel.h