match Class Reference

#include <match.h>

List of all members.

Public Member Functions
	match (istream &in) throw (inputException)
	match (const match &m)
match &	operator= (const match &m)
bool	overlap (const match &m) const
float	getScore () const
int	getLength () const
float	getLenxid () const
double	getE () const
	match (istream &in) throw (inputException)
	match (const match &m)
match &	operator= (const match &m)
bool	overlap (const match &m) const
float	getScore () const
int	getLength () const
float	getLenxid () const
double	getE () const
Private Attributes
float	identity
int	length
int	mismatch
int	gap
int	qstart
int	qend
int	tstart
int	tend
double	E
float	score
Friends
ostream &	operator<< (ostream &o, const match &m)
ostream &	operator<< (ostream &o, const match &m)

---

Constructor & Destructor Documentation

match::match

(

istream &

in

)

throw (inputException)

match::match

(

const match &

m

)

match::match

(

istream &

in

)

throw (inputException)

match::match

(

const match &

m

)

---

Member Function Documentation

match& match::operator=

(

const match &

m

)

bool match::overlap

(

const match &

m

)

const

float match::getScore

(

)

const [inline]

References score.

int match::getLength

(

)

const [inline]

References length.

float match::getLenxid

(

)

const [inline]

References identity, and length.

double match::getE

(

)

const [inline]

References E.

match& match::operator=

(

const match &

m

)

bool match::overlap

(

const match &

m

)

const

float match::getScore

(

)

const [inline]

References score.

int match::getLength

(

)

const [inline]

References length.

float match::getLenxid

(

)

const [inline]

References identity, and length.

double match::getE

(

)

const [inline]

References E.

---

Friends And Related Function Documentation

ostream& operator<<	(	ostream &	o,
		const match &	m
	)			[friend]

ostream& operator<<	(	ostream &	o,
		const match &	m
	)			[friend]

---

Member Data Documentation

float match::identity [private]

Referenced by getLenxid().

int match::length [private]

Referenced by getLength(), and getLenxid().

int match::mismatch [private]

int match::gap [private]

int match::qstart [private]

int match::qend [private]

int match::tstart [private]

int match::tend [private]

double match::E [private]

Referenced by getE().

float match::score [private]

Referenced by getScore().

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The documentation for this class was generated from the following files:

• seqana/blastio/match.h
• seqana/match.h