protein Class Reference

#include <head.h>

List of all members.

Public Member Functions
	protein ()
	~protein ()
void	read (ifstream &ins, char ln[])
void	write (ostream &ous)
string	fname () const
string	cname () const
bool	orgNamed () const
const char *	key () const
void	clear ()
Static Public Attributes
static char	rel [12] = "62.00"
Private Member Functions
void	creatDate (ostream &ous) const
void	revDate (ostream &ous) const
void	tcDate (ostream &ous) const
bool	seqRevised () const
bool	textChanged () const
Private Attributes
char	entry [24]
char	type [24]
string	title
string	altName
string	contains
string	org
string	date
string	acc
list< ref >	reflist
string	comm
list< genetics >	genlist
string	cplx
list< func >	funclist
string	superfam
string	keywd
list< feature >	felist
char *	seq
int	seqlen
int	seqmaxlen
int	cksm

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Constructor & Destructor Documentation

protein::protein

(

)

References entry, seq, seqmaxlen, and type.

protein::~protein

(

)

References seq.

---

Member Function Documentation

void protein::creatDate

(

ostream &

ous

)

const [private]

References date, and Date::gbstr().

Referenced by write().

void protein::revDate

(

ostream &

ous

)

const [private]

References date, and Date::gbstr().

Referenced by write().

void protein::tcDate

(

ostream &

ous

)

const [private]

References date, and Date::gbstr().

Referenced by write().

bool protein::seqRevised

(

)

const [inline, private]

References date.

Referenced by write().

bool protein::textChanged

(

)

const [inline, private]

References date.

Referenced by write().

void protein::read	(	ifstream &	ins,
		char	ln[]
	)

References acc, altName, cksm, feature::clear(), func::clear(), genetics::clear(), ref::clear(), comm, contains, parerr::context(), cplx, DATAIDX, date, entry, felist, funclist, genlist, getf(), getField(), keywd, LINE, org, parerr::pick(), feature::read(), func::read(), genetics::read(), ref::read(), reflist, seq, seqlen, seqmaxlen, superfam, title, toupper(), and type.

Referenced by main().

void protein::write

(

ostream &

ous

)

References altName, cksm, cname(), comm, contains, cplx, creatDate(), date, entry, felist, fname(), funclist, keywd, org, orgNamed(), rel, revDate(), seq, seqlen, seqRevised(), string2list(), superfam, tcDate(), textChanged(), title, and type.

Referenced by main().

string protein::fname

(

)

const

References org.

Referenced by main(), and write().

string protein::cname

(

)

const

References org.

Referenced by main(), and write().

bool protein::orgNamed

(

)

const [inline]

References org.

Referenced by write().

const char* protein::key

(

)

const [inline]

References entry.

Referenced by main().

void protein::clear

(

)

References acc, altName, cksm, comm, contains, cplx, date, entry, felist, funclist, genlist, keywd, org, reflist, seqlen, superfam, title, and type.

Referenced by main().

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Member Data Documentation

char protein::entry[24] [private]

Referenced by clear(), key(), protein(), read(), and write().

char protein::type[24] [private]

Referenced by clear(), protein(), read(), and write().

string protein::title [private]

Referenced by clear(), read(), and write().

string protein::altName [private]

Referenced by clear(), read(), and write().

string protein::contains [private]

Referenced by clear(), read(), and write().

string protein::org [private]

Referenced by clear(), cname(), fname(), orgNamed(), read(), and write().

string protein::date [private]

Referenced by clear(), creatDate(), read(), revDate(), seqRevised(), tcDate(), textChanged(), and write().

string protein::acc [private]

Referenced by clear(), and read().

list<ref> protein::reflist [private]

Referenced by clear(), and read().

string protein::comm [private]

Referenced by clear(), read(), and write().

list<genetics> protein::genlist [private]

Referenced by clear(), and read().

string protein::cplx [private]

Referenced by clear(), read(), and write().

list<func> protein::funclist [private]

Referenced by clear(), read(), and write().

string protein::superfam [private]

Referenced by clear(), read(), and write().

string protein::keywd [private]

Referenced by clear(), read(), and write().

list<feature> protein::felist [private]

Referenced by clear(), read(), and write().

char* protein::seq [private]

Referenced by protein(), read(), write(), and ~protein().

int protein::seqlen [private]

Referenced by clear(), read(), and write().

int protein::seqmaxlen [private]

Referenced by protein(), and read().

int protein::cksm [private]

Referenced by clear(), read(), and write().

char protein::rel = "62.00" [static]

Referenced by main(), and write().

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The documentation for this class was generated from the following files:

• pirtoace/head.h
• pirtoace/head.cpp