region Class Reference

#include <blast.h>

List of all members.

Public Member Functions
	region (const alignment &al)
void	assign (int be, int en, float sc, double ex)
int	cover (region &r) const
int	add (const alignment &r, bool &accept, double scut, double ecut, int cl)
bool	isup () const
bool	iscompl () const
bool	sameDirection (alignment &r) const
int	distance (const alignment &aa) const
	region (const alignment &al)
void	assign (int be, int en, float sc, double ex)
int	cover (region &r) const
int	add (const alignment &r, bool &accept, double scut, double ecut, int cl)
bool	isup () const
bool	iscompl () const
bool	sameDirection (alignment &r) const
int	distance (const alignment &aa) const
Private Attributes
int	s
int	f
float	hs
double	exp
int	tc

---

Constructor & Destructor Documentation

region::region

(

const alignment &

al

)

References exp, f, hs, s, and tc.

region::region

(

const alignment &

al

)

---

Member Function Documentation

void region::assign	(	int	be,
		int	en,
		float	sc,
		double	ex
	)

References exp, f, hs, s, and tc.

int region::cover

(

region &

r

)

const

References f, isup(), and s.

Referenced by distance().

int region::add	(	const alignment &	r,
		bool &	accept,
		double	scut,
		double	ecut,
		int	cl
	)

References f, hs, isup(), s, and tc.

bool region::isup

(

)

const [inline]

References f, and s.

Referenced by add(), cover(), distance(), and sameDirection().

bool region::iscompl

(

)

const [inline]

References f, and s.

bool region::sameDirection

(

alignment &

r

)

const

References isup().

int region::distance

(

const alignment &

aa

)

const

References cover(), f, isup(), and s.

void region::assign	(	int	be,
		int	en,
		float	sc,
		double	ex
	)

int region::cover

(

region &

r

)

const

int region::add	(	const alignment &	r,
		bool &	accept,
		double	scut,
		double	ecut,
		int	cl
	)

bool region::isup

(

)

const [inline]

References f, and s.

bool region::iscompl

(

)

const [inline]

References f, and s.

bool region::sameDirection

(

alignment &

r

)

const

int region::distance

(

const alignment &

aa

)

const

---

Member Data Documentation

int region::s [private]

Referenced by add(), assign(), cover(), distance(), iscompl(), isup(), and region().

int region::f [private]

Referenced by add(), assign(), cover(), distance(), iscompl(), isup(), and region().

float region::hs [private]

Referenced by add(), assign(), and region().

double region::exp [private]

Referenced by assign(), and region().

int region::tc [private]

Referenced by add(), assign(), and region().

---

The documentation for this class was generated from the following files:

• seqana/blast.h
• seqana/blastio/blast.h
• seqana/blast.cpp
• seqana/blastio/blast.cpp