scorepair Class Reference

#include <scorepair.h>

List of all members.

Public Member Functions
void	read (istream &in, int cut)
void	clear ()
int	quality ()
void	showcluster (ostream &ou)
set< string >	badMembers () const
void	clusterArray (vector< set< string > > &clar)
vector< set< string > >	getClusters ()
void	addNewCluster (connection &pgdb, const string &clusterid, int &clusterIdCnt)
Private Attributes
multimap< string, string >	rel
vector< string >	names
vector< int >	seqlens
hatrees< string >	subclstr

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Member Function Documentation

void scorepair::read	(	istream &	in,
		int	cut
	)

References clear(), name, names, rel, and seqlens.

Referenced by main(), and qcdir().

void scorepair::clear

(

)

[inline]

References names, rel, and seqlens.

Referenced by read().

int scorepair::quality

(

)

References names, rel, and subclstr.

Referenced by main(), and qcdir().

void scorepair::showcluster

(

ostream &

ou

)

References subclstr.

Referenced by main().

set< string > scorepair::badMembers

(

)

const

References names, and subclstr.

Referenced by main().

void scorepair::clusterArray

(

vector< set< string > > &

clar

)

References subclstr.

Referenced by addNewCluster(), and addNewCluster().

vector< set< string > > scorepair::getClusters

(

)

References subclstr.

void scorepair::addNewCluster	(	connection &	pgdb,
		const string &	clusterid,
		int &	clusterIdCnt
	)

References clusterArray(), deleteCluster(), and work.

Referenced by main().

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Member Data Documentation

multimap<string, string> scorepair::rel [private]

Referenced by clear(), quality(), and read().

vector<string> scorepair::names [private]

Referenced by badMembers(), clear(), quality(), and read().

vector<int> scorepair::seqlens [private]

Referenced by clear(), and read().

hatrees<string> scorepair::subclstr [private]

Referenced by badMembers(), clusterArray(), getClusters(), quality(), and showcluster().

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The documentation for this class was generated from the following files:

• cluster/scorepair.h
• cluster/scorepair.cpp