sim4Args Class Reference

#include <sim4.h>

List of all members.

Public Member Functions
void	getArg (int agc, char *agv[])
	sim4Args ()
	~sim4Args ()
Public Attributes
int	ali_flag
int	poly_flag
int	acc_flag
int	reverse
int	DRANGE
int	weight
int	cutoff
bool	set_K
bool	set_C
int	W
int	K
int	C
int	X
int	B
int	CDS_from
int	CDS_to
char *	S

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Constructor & Destructor Documentation

sim4Args::sim4Args

(

)

References acc_flag, ali_flag, B, C, CDS_from, CDS_to, cutoff, DEFAULT_C, DEFAULT_DRANGE, DEFAULT_K, DEFAULT_W, DEFAULT_WEIGHT, DEFAULT_X, DIST_CUTOFF, DRANGE, K, poly_flag, reverse, S, set_C, set_K, W, weight, and X.

sim4Args::~sim4Args

(

)

References S.

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Member Function Documentation

void sim4Args::getArg	(	int	agc,
		char *	agv[]
	)

References acc_flag, ali_flag, B, C, CDS_from, CDS_to, cutoff, DRANGE, K, poly_flag, reverse, S, set_C, set_K, W, weight, and X.

Referenced by main().

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Member Data Documentation

int sim4Args::ali_flag

Referenced by getArg(), main(), SIM4(), and sim4Args().

int sim4Args::poly_flag

Referenced by getArg(), main(), SIM4(), and sim4Args().

int sim4Args::acc_flag

Referenced by getArg(), SIM4(), and sim4Args().

int sim4Args::reverse

Referenced by getArg(), main(), and sim4Args().

int sim4Args::DRANGE

Referenced by getArg(), link_msps(), and sim4Args().

int sim4Args::weight

Referenced by exon_cores(), getArg(), and sim4Args().

int sim4Args::cutoff

Referenced by getArg(), good_ratio(), and sim4Args().

bool sim4Args::set_K

Referenced by getArg(), SIM4(), and sim4Args().

bool sim4Args::set_C

Referenced by getArg(), SIM4(), and sim4Args().

int sim4Args::W

Referenced by getArg(), main(), SIM4(), and sim4Args().

int sim4Args::K

Referenced by getArg(), SIM4(), and sim4Args().

int sim4Args::C

Referenced by getArg(), SIM4(), and sim4Args().

int sim4Args::X

Referenced by getArg(), SIM4(), and sim4Args().

int sim4Args::B

Referenced by getArg(), and sim4Args().

int sim4Args::CDS_from

Referenced by getArg(), main(), and sim4Args().

int sim4Args::CDS_to

Referenced by getArg(), main(), and sim4Args().

char* sim4Args::S

Referenced by getArg(), main(), sim4Args(), and ~sim4Args().

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The documentation for this class was generated from the following files:

• sim4cpp/sim4.h
• sim4cpp/sim4.cpp