compnr2gentropy.cpp File Reference

#include "mysql++.h"
#include <string>
#include "bioseq.h"
#include "dynaln.h"
#include <math.h>
#include <fstream>

Functions
pair< double, double >	computeZvalue (Protein &p1, Protein &p2, int n, ostream &ous)
pair< double, double >	avgstd (vector< double > nums)
void	createTmpTable (const string &tab, mysqlpp::Connection &conn)
void	bufferProteinSeq (Connection &db, Connection &nrdb, const string &blastTab, map< string, string > &id2pep, int offset, int rowcount)
bool	addEntropyColumn (Connection &conn, const string &tab)
int	main (int argc, char *argv[])

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Function Documentation

bool addEntropyColumn	(	Connection &	conn,
		const string &	tab
	)

pair<double,double> avgstd

(

vector< double >

nums

)

void bufferProteinSeq	(	Connection &	db,
		Connection &	nrdb,
		const string &	blastTab,
		map< string, string > &	id2pep,
		int	offset,
		int	rowcount
	)

References string().

Referenced by main().

pair<double,double> computeZvalue	(	Protein &	p1,
		Protein &	p2,
		int	n,
		ostream &	ous
	)

void createTmpTable	(	const string &	tab,
		mysqlpp::Connection &	conn
	)

int main	(	int	argc,
		char *	argv[]
	)

References addEntropyColumn(), at, bufferProteinSeq(), bioseq::computeEntropy(), computeZvalue(), min, passwd, string(), DNA::subseq(), substr(), DNA::translate(), and user.