countest.cpp File Reference

#include <iostream>
#include <fstream>
#include <string>
#include <set>
#include <cstdlib>
#include <cstring>

Functions
void	usage ()
void	countOneFile (set< string > &ids, const string &infile)
int	main (int argc, char *argv[])

---

Function Documentation

void countOneFile	(	set< string > &	ids,
		const string &	infile
	)

References ifstream().

Referenced by main().

int main	(	int	argc,
		char *	argv[]
	)

References countOneFile(), and usage.

void usage

(

)

this is a helper program to count distinct estids in the ESTId column of the combest result. So it is the actual number of ESTs mapped. This could be lower for deeply covered genome because of the coverage depth-dependent filtering.