fqtable.h

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00001 #ifndef FQTABLE_H
00002 #define FQTABEL_H
00003 
00004 //#define TOTALF 63  //total Features
00005 //#define TOTALQ 74  //total Qualifier
00006 extern const int TOTALF = 63;
00007 extern const int TOTALQ = 74;
00008 
00009 extern const char *ft[] = { "3'clip", "3'UTR", "5'clip", "5'UTR", "allele", 
00010 "attenuator", "CAAT_signal", "CDS", "conflict", "C_region", "D-loop", 
00011 "D_segment", "enhancer", "exon", "GC_signal", "gene", "iDNA", "intron", 
00012 "J_region", "LTR", "mat_peptide", "misc_binding", "misc_difference", 
00013 "misc_feature", "misc_recomb", "misc_RNA", "misc_signal", 
00014 "misc_structure", "modified_base", "mRNA", "mutation", "N_region", 
00015 "old_sequence", "polyA_signal", "polyA_site", "precursor_RNA", "primer", 
00016 "primer_bind", "prim_transcript", "promoter", "protein_bind", "RBS", 
00017 "repeat_region", "repeat_unit", "rep_origin", "rRNA", "satellite", 
00018 "scRNA", "sig_peptide", "snRNA", "source", "stem_loop", "STS", 
00019 "S_region", "TATA_signal", "terminator", "transit_peptide", "transposon", 
00020 "tRNA", "unsure", "variation", "V_region", "V_segment"};
00021 //this is the features table
00022 
00023 /*for human reader
00024 Features:
00025 0-"3'clip", "3'UTR", "5'clip", "5'UTR", "allele", 
00026 5-"attenuator", "CAAT_signal", "CDS", "conflict", "C_region", "D-loop", 
00027 11-"D_segment", "enhancer", "exon", "GC_signal", "gene", "iDNA", "intron", 
00028 18-"J_region", "LTR", "mat_peptide", "misc_binding", "misc_difference", 
00029 23-"misc_feature", "misc_recomb", "misc_RNA", "misc_signal", 
00030 27-"misc_structure", "modified_base", "mRNA", "mutation", "N_region", 
00031 32-"old_sequence", "polyA_signal", "polyA_site", "precursor_RNA", "primer", 
00032 37-"primer_bind", "prim_transcript", "promoter", "protein_bind", "RBS", 
00033 42-"repeat_region", "repeat_unit", "rep_origin", "rRNA", "satellite", 
00034 47-"scRNA", "sig_peptide", "snRNA", "source", "stem_loop", "STS", 
00035 53-"S_region", "TATA_signal", "terminator", "transit_peptide", "transposon", 
00036 58-"tRNA", "unsure", 60-"variation", "V_region", 62-"V_segment"};
00037 */
00038 
00039 
00040 extern const char *qt[] = {"/allele=", "/anticodon=", "/bound_moiety=", 
00041 "/cell_line=", "/chromosome=", "/chloroplast", "/chromoplast", 
00042 "/citation=", "/clone=", "/clone_lib=", "/codon=", "/codon_start=", 
00043 "/cons_splice=", "/cultivar=", "/cyanelle", "/db_xref=", "/dev_stage=", 
00044 "/direction=", "/EC_number=", "/evidence=", "/exception=", "/focus=", 
00045 "/frequency=", "/function=", "/gene=", "/gdb_xref=", "/germline", 
00046 "/haplotype=", "/insertion_seq=", "/isolate=", "/kinetoplast", "/label=", 
00047 "/lab_host=", "/map=", "/macronuclear", "/mitochondrion", "/mod_base=", 
00048 "/note=", "/number=", "/organism=", "/partial", "/PCR_conditions=", 
00049 "/pop_variant=", "/phenotype=", "/plasmid=", "/product=", "/protein_id=", 
00050 "/proviral", "/pseudo", "/rearranged", "/replace=", "/rpt_family=", 
00051 "/rpt_type=", "/rpt_unit=", "/sequenced_mol=", "/serotype=", "/sex=", 
00052 "/specific_host=", "/specimen_voucher=", "/standard_name=", "/strain=", 
00053 "/sub_clone=", "/sub_species=", "/sub_strain=", "/tissue_lib=", 
00054 "tissue_type=", "/translation=", "/transl_except=", "/transl_table=", 
00055 "/transposon=", "/usedin=", "/variety=", "/virion", "/cell_type="}; 
00056 //qualifier table
00057 
00058 
00059 /*
00060 the qualifier table:
00061 !!!index starts from 1 heres minus one
00062 1-/allele=  2-/anticodon= 3-/bound_moiety= 4-/cell_line= 5/chromosome=
00063 6/chloroplast", 7/chromoplast",
00064 8/citation=", 9/clone=", 10/clone_lib=", 11/codon=", 12/codon_start=",
00065 13/cons_splice=", "/cultivar=", "/cyanelle", 16/db_xref=", "/dev_stage=",
00066 18/direction=", "/EC_number=", "/evidence=", "/exception=", "/focus=",
00067 23/frequency=", "/function=", "/gene=", "/gdb_xref=", "/germline",
00068 28/haplotype=", 29/insertion_seq=", "/isolate=", 31/kinetoplast", "/label=",
00069 33/lab_host=", "/map=", "/macronuclear", 36"/mitochondrion", "/mod_base=",
00070 38/note=", "/number=", "/organism=", 41/partial", "/PCR_conditions=",
00071 43/pop_variant=", "/phenotype=", 45/plasmid=", "/product=", "/protein_id=",
00072 48/proviral", "/pseudo", "/rearranged", "/replace=", 52/rpt_family=",
00073 53/rpt_type=", "/rpt_unit=", "/sequenced_mol=",  56-"/serotype=", "/sex=",
00074 58/specific_host=", "/specimen_voucher=", "/standard_name=", "/strain=",
00075 62/sub_clone=", "/sub_species=", "/sub_strain=",  65"/tissue_lib=",
00076 66tissue_type=", 67/translation=", "/transl_except=", "/transl_table=",
00077 70/transposon=", "/usedin=", "/variety=", "/virion"  74/cell_type=};  
00078 75
00079 */
00080 #endif