Aceobj.h File Reference

#include <string>
#include <sstream>
#include <vector>

Go to the source code of this file.

Classes
struct	Acenode
class	Aceobj
Functions
int	digestLine (vector< string > &vec, const string &str)
Acenode *	find (Acenode *n, const string &tag)
void	del (Acenode *p)

---

Function Documentation

void del

(

Acenode *

p

)

References Acenode::child, del(), and Acenode::sibling.

Referenced by RangeChain::add(), IntervalChain::add(), ChainAvgrange::addRange(), Graphid::assemble(), Graph::assemble(), Aceobj::clear(), clustergene(), computeRelativeProfileHeight(), del(), displaySegments(), Coverdepth::findLeftDropoff(), Coverdepth::findRightDropoff(), growZero(), joinNeighbor(), mergeTriple(), refineLoci(), removeSimilarModels(), removeSingleExonModel(), topfp(), and Aceobj::~Aceobj().

int digestLine	(	vector< string > &	vec,
		const string &	str
	)

the node has a Type:Value pair, because the Type can be any string value, it is not practical to use integer to represent them. When new types are added we have to update the definition of the integer value. So it will be represented by pair<string,string>

References split().

Referenced by Aceobj::parse().

Acenode* find	(	Acenode *	n,
		const string &	tag
	)

recursive function must be written in this format, as non-member function.

References Acenode::child, cmp_nocase(), find(), Acenode::sibling, Acenode::type, and Acenode::value.

Referenced by breakonecl(), ref::dump(), find(), Aceobj::get(), hitCount(), longestORFPlus(), outputHeader(), book::parse(), locseg::parse(), ref::process(), Gsubreader::read(), feature::wjoinseg(), and ref::writeProtein().