getpvalue.c File Reference

#include <stdio.h>
#include <math.h>
#include <malloc.h>
#include "seqaln.h"

Functions
	getpvalue (struct SEQALN_SEQUENCE *seq1, struct SEQALN_SEQUENCE *seq2, struct SEQALN_CONSTANTS *scoring, struct SEQALN_RESULTS *results, struct SEQALN_IO *io)

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Function Documentation

getpvalue	(	struct SEQALN_SEQUENCE *	seq1,
		struct SEQALN_SEQUENCE*	seq2,
		struct SEQALN_CONSTANTS *	scoring,
		struct SEQALN_RESULTS *	results,
		struct SEQALN_IO *	io
	)

References SEQALN_CONSTANTS::allscores, SEQALN_PVALUE::coeff, SEQALN_CONSTANTS::Debug, SEQALN_PVALUE::gamma, SEQALN_PVALUE::hist, linreg(), SEQALN_PVALUE::ndeclumps, SEQALN_PVALUE::nhist, SEQALN_PVALUE::nsims, SEQALN_PVALUE::p, SEQALN_RESULTS::pvalue, SEQALN_CONSTANTS::rptptable, SEQALN_IO::STDERR, and SEQALN_IO::STDOUT.

Referenced by pvlocalS(), and pvsrlocalS().