Here is a list of all file members with links to the files they belong to:

- m -

• M : sim4b1.cpp , sim4b1.h , codon.h
• main() : alnmodel.cc , variation.cpp , intergenic.cpp , testread.cpp , i_globalS.c , blpur.cpp , blpurify.cpp , i_localS.c , filterblast.cpp , selortho.cpp , simple_client_main.cpp , i_mfitD.c , blpur.cpp , blpurify.cpp , i_mfitS.c , cleanshort.cpp , uniqueshortseq.cpp , testaql.cpp , simple_server_main.cpp , i_mglobalD.c , doublestop.cpp , GCcontent.cpp , i_mglobalS.c , selortho.cpp , estsep.cpp , testdbinfo.cpp , i_mlocalS.c , picknewseq.cpp , rmfrgss.cpp , i_moverS.c , seqdiv.cpp , seqsep.cpp , gbresub.cpp , testclt.cpp , gbprt2ace.cpp , i_mpvlocalS.c , g2a.cpp , gb2ace.cpp , i_mpvsrlocalS.c , gdna2a.cpp , gprt2a.cpp , testobj.cpp , i_msrlocalS.c , test.cpp , parsesw.cpp , i_mtrlocalS.c , test.cpp , dbformat.cpp , testobj.cpp , kzgenewise.cpp , i_overS.c , sim4main.cpp , GrishinDistance.cpp , i_pfitS.c , test.cpp , testlib.cpp , fap.cpp , i_pvlocalS.c , i_pvsrlocalS.c , qcaln.cc , bionj.cpp , breakcl.cpp , driver.cc , i_srlocalS.c , i_trlocalS.c , testmd5.cpp , mlocalSDB.c , icat.c , chimeradetect.cpp , LoadCDSFromAce.java , i_globalS.c , mlocalSDB.cpp , gpcrtree.cpp , tabaln.cpp , tabaln_same.cpp , ngiden2distance.cpp , chimeradetect_mysql.cpp , pir2ace.cpp , testaln.cpp , pir_to_fasta.c , archivegmap.cpp , alnexon.cpp , testblast.cpp , gecods.cpp , astyping.cpp , chaining.cpp , dbaln.cpp , caiwe.cpp , dbaln_cds.cpp , dbaln_chimera.cpp , qcmultialn.cc , oldbionj.c , gecods_mysql.cpp , checkchimera.cpp , dbaln_chimerarmsimp.cpp , dbaln_chimerathread.cpp , combest.cpp , dbaln_fungal.cpp , dbaln_fungalbt.cpp , orthopara.cc , countest.cpp , dbaln_fungalrmsimp.cpp , dbaln_nr.cpp , estlibcount.cpp , gwseedaln.cpp , testaln.cpp , testbionj.cpp , picklongrep.cpp , gathercaiwegene.cpp , testDBInfo.cpp , testmatrix.cpp , gathergene.cpp , testmysql.cpp , addentropy.cpp , pickmember.cpp , intronstop.cpp , buildjgitranscript.cpp , buildlocusinfo.cpp , nrep.cpp , compnr2gentropy.cpp , computenrEntropy.cpp , seqaln2gapos.cpp , testseq.cpp , pickorthodiv.cpp , testEsambl.cpp , dumpcds.cpp , mergefootprint.cpp , testExon.cpp , pfog.cpp , pfogfile.cpp , rmfalselink.cpp , testGModel.cpp , pfogmultipledb.cpp , pickrepmodel.cpp , testinterval.cpp , picktopcds.cpp , wolm.cpp , testsys.cpp , testsimple.cpp , testrange.cpp , simple.cpp , rmsimpmatch.cpp , preparegw.cpp , picktopfootprint.cpp , getsubseq.cpp , subcluster.cpp , genigfsr.c , picktopmodel.cpp , i_fitD.c , testgsl.cpp , i_fitS.c , i_globalD.c
• maintained : README
• make_seq() : make_seq.c
• makeExonLength() : alnexon.cpp
• makelocus() : buildlocusinfo.cpp
• makeModels() : combest.cpp
• mapdiv() : pickmember.cpp
• markdiag() : markdiag.c
• markseq() : markseq.c
• mask : sim4b1.cpp
• MAT : seqaln.h
• MATCH : sim4.h
• MATRIX : blast.h , seqaln.h
• max() : util.h , MSPcrunch.h , sim4.h , util.c , util.h , helper.h
• MAX : misc.h
• max() : helper.h
• max3() : util.c , util.h
• MAX_ARG_LEN : aln_input.h
• MAX_GRINIT : sim4.h
• MAX_INTERNAL_GAP : sim4.h
• MAX_INTRON : sim4.h
• MAXCONNECTIONS : Socket.h
• maxDistanceOfModels() : caiwe.cpp
• maxFullORF() : RNAModel.cpp
• MAXHOSTNAME : Socket.h
• MAXLINE : seqaln.h
• MAXPATH : seqaln.h
• MAXRECV : Socket.h
• MAXSEQNAME : seqaln.h
• MAXTITLE : pir_to_fasta.c
• May : README
• MD5_file() : driver.cc
• MD5_filter() : driver.cc
• MD5_string() : driver.cc
• MD5_testSuite() : driver.cc
• MD5_timeTrial() : driver.cc
• MD5_usage() : driver.cc
• mdelta() : helper.h , helper.c , helper.h
• memfree() : helper.h , helper.c , helper.h
• memoryRelease() : nrep.cpp
• MEMUSE : seqaln.h
• merge() : sim4b1.cpp
• mergeNeighbor() : mergefootprint.cpp
• mergeRoot() : hatrees.h
• mergeTriple() : Coverdepth.cpp
• message : README
• Mexp : blast.h
• mgsaln() : mgsaln.cpp
• min : sim4.h , MSPcrunch.h
• MIN : misc.h
• min() : util.h , util.c , MSPcrunch.h , util.h
• min3() : util.c , util.h
• min_CDS_len : nrep.cpp
• MIN_INTRON : sim4.h
• MININT : sim4.h
• minutr_len : nrep.cpp
• MISMATCH : sim4.h
• mixAbwithEST() : caiwe.cpp
• modelFarEnough() : RNAModel.cpp
• modeltype : RNAModel.h
• modify : subcluster.cpp
• mRNA : RNAModel.h
• msp : sim4b1.cpp
• MSP : MSPcrunch.h
• msp2exons() : sim4b1.cpp
• msp_list : sim4b1.cpp
• Msp_ptr : sim4.h
• MTYPE : seqaln.h
• mutex : dbaln_chimerarmsimp.cpp
• mutualExclusive() : astyping.cpp
• MY_MD5 : cadbc.cpp
• MYSQLPLUS2 : dbaln_fungalbt.cpp , gwseedaln.cpp , dbaln_cds.cpp , dbaln_fungal.cpp , dbaln_nr.cpp , dbaln_chimerathread.cpp , buildjgitranscript.cpp , dbaln_chimera.cpp , dbaln.cpp
• mysqlTableExists() : chimeradetect_mysql.cpp