Here is a list of all file members with links to the files they belong to:

- o -

• O_INTRON : sim4.h
• object : README
• objects() : README
• occurred : README
• Oceanus : README.combest
• Oct : README_8nrep.html , README_8splicing.html , README_8ticket.html , README__group.html , README.html , README_8combest.html
• offset1 : prnt.cpp
• offset2 : prnt.cpp
• ok : alignment.h
• OK : sim4.h
• on : README
• one : README
• operator-() : GenModel.cpp
• operator<() : Seqrange.cpp
• operator<<() : group.cpp , match.cpp , group.cpp , version.cpp , date.cpp , dbinfo.cpp , GModel.h , head.cpp , sim4.cpp , pfeature.cpp , md5.cc , Refreader.cpp , book.cpp , date.cpp , prt.cpp , refloc.cpp , checkchimera.cpp , Coverdepth.cpp , sim4.cpp , doublestop.cpp , match.cpp , Coverdepth.cpp , mergefootprint.cpp , Match.cpp , alignment.cc , Esambl.cpp , Match.cpp , Blmodel.cpp , linktrie.cpp , Esambl.cpp , alignseg.cpp , bioseq.cpp , Esambl.cpp , Range.cpp , Interval.cpp , Gmapres.cpp , FPGModel.cpp , Gmapres.cpp , GModel.h , Model.cpp , Range.cpp , TranscriptExon.cpp , Seqrange.cpp , alnrange.cpp , boxchain.cpp , alnrange.cpp , ChainAvgrange.cpp , Match.cpp , group.cpp , match.cpp , Match.cpp , cluster.cc , group.cpp
• operator==() : Seqrange.cpp
• operator>() : Seqrange.cpp
• operator>>() : date.cpp
• orgidStmt : LoadCDSFromAce.java
• orgtag() : feature.cpp
• Orpara : README_8splicing.html , README.html , README_8ticket.html , README__group.html , README_8nrep.html , README_8combest.html
• output_format : seqaln2gapos.cpp
• outputContainer() : alnexon.cpp
• outputgaparray() : seqaln2gapos.cpp
• outputGapList() : alignment.cc
• outputHeader() : estlibcount.cpp
• outputList() : alignment.cc , alnmodel.cc , alignment.cc
• OVER : seqaln.h
• overlayRVR() : bioseq.h , bioseq.cpp
• overS() : overS.c