Class Hierarchy

This inheritance list is sorted roughly, but not completely, alphabetically:

• _MSP
• accession
• aceconnections
• AceException
  • AQLException
  • DNANotFound
  • pepNotFound
• Acenode
• Aceobj
• acedb::Aceobj
• acedb::Aceobj::AceobjNode
• acedb::Aceobj::DumpStore
• aceparam
• afterMatchQuery
• alignment
• alignmentRunner
• alignpos
• Alignseg
  • Alignsegex
• aln
• Alnparam
• alnrange
  • rangePair
• Alnrange
• alnsummary
• Alnview
• Altranscript
• argv_scores
• ASCountKeeper
• avgrange
• Badinput
• beforeMatchQuery
• bioseq
  • DNA
    • mRNA
  • Protein
• bioseqexception
• BlastParameter
• book
• Boxchain
• cadbc
• CDSload
• ChainAvgrange
• clusmethod
• cluster
• Clusterdump
• cmpMatchTbeginInt
• cmpMatchTbeginIntPtr
• cmpMatchTendInt
• cmpMatchTendIntPtr
• cmpQueryPtr
• cmpTargetDirectionalPtr
• cmpTargetPtr
• codon
• compfirst
• Conpos
• Conseq
• coordinates
• Coverdepth
• Cutoff
• Date
• DateException
• dbinfo
  • acedbinfo
  • acedbinfo
  • pgdbinfo
  • pgdbinfo
• DBInfo
• Dbstat
• dbtime
• Dip
  • LeftDropoff
  • RightDropoff
• divstat
• DRgreater
• dseq
• DumpCDSLoadFile
• dumpClusterPrt
• dumpClusterTitle
• dyaln
• Dynaln
  • LSDynaln
  • LSDynaln
• edit
• edit_script
• edit_script_list
• ESTCombined
• exon
• ExondirectionError
• expair
• ExtractEnd
• featerr
• featErr
  • featLocErr
• feature
• Fetchaceprt
• FitNgidentity
• fpkey
• func
• gbdate
• gberr
  • gbreferr
• gbprt
• gbseq
  • gbdnaseq
  • gbprtseq
• gconst
  • group
    • gdiagnosis
  • gstat
• GeneModel
• genetics
• gentree
• Gfeature
  • Genefeature
• Gmapalnseg
• Gmapath
• Gmapres
• GModel< T >
• GModel< fpkey >
  • FPGModel
  • FPGModel
• Graph
• Graphid
• GraphNode
• GReaderState
  • GReaderStateC
  • GReaderStateM
  • GReaderStateS
• greaterRangeLength
• Gsubreader
• Gsubrecord
• hash_node
• hatrees< T >
• head
• hit
• hit::end
• idpair
• InputColumn
• inputend
• inputException
• instopres
• Intabcol
• Interval
  • HalfAlignInterval
  • IntervalChain
  • IntervalPile
    • HalfAlignPile
• intnode
• intron
• InvalidJGIModel
• InvalidModel
• InvalidQualifier
• InvalieInputFeature
• Invariant
• jinfo
• journal
• kzseq
• Lale
• lessByChainDirection
• lessByChainDirectionPtr
• lessChainPtr
• lesschptr
• lessGraphNodePtr
• lgraph
• Linkbox
• Linkmatch
• lnode
• LoadCDSFromOneDB
• loadpair
• loadprt
• locseg
  • namedlocseg
• ltAlignsegexBeginYPtr
• ltAlignsegexEndYPtr
• ltAlignsegYXlen
• ltMatchQueryBeginPtr
• ltModptr
• ltrie
• M8MatchChain
• match
• Match
  • Blmodel
  • M8Match
    • M8MatchEX
• MatchQueryLessThan
• Matrix
• MD5
• mgsaln
• Model
• ModelFactory
• ModmRNAvalidate
• msp
• Mydatabase
• MysqlDBInfo
• NegativeCoverage
• njtree
• node< T >
• notlessMatchQueryBegin
• Orgload
• OutsideGenomicSequence
• parerr
• parsererror
• PfogParameters
• pointers
• PointOutChain
• pregcut
• ProgParam
• Progparam
• ProgParameters
• protein
• ProteinTable
• prt
• qualif
• Range
  • Noschain
    • Alnchain
      • Alnchainid
    • ESTModel
    • GenModel
    • mRNAModelLight
      • mRNAModelCaiwe
    • RNAModel
      • mRNAModel
        • ESTAssembly
          • ESTAssemblyid
        • JGIModel
        • mRNAModelUpdate
  • RangeChain
  • Rangewid
• Ref
  • Patent
  • Refwithty
    • Book
    • Inpress
    • Journal
      • Online
    • Thesis
    • Unpublished
  • Submission
• ref
• reference
• Reference
• refloc
• Refreader
• region
• Region
  • RegionInt
  • RegionStr
• Relmin
• Relrow
• Relrow_eq1
• Relrow_eq1Lgcov
• Relrow_eq1Matchlen
• Relrow_eq1Score
• Relrow_eq1Smcov
• Relrow_eq2
• Relrow_less
• Relrow_lessLgcov
• Relrow_lessMatchlen
• Relrow_lessScore
• Relrow_lessSmcov
• Resrow
• Result
• scorepair
• SEQALN_CONSTANTS
• SEQALN_IO
• SEQALN_LSTRUCT
• SEQALN_PROFILE
• SEQALN_PVALUE
• SEQALN_RESULTS
• SEQALN_SEQUENCE
• SEQALN_SIJ
• seqelem
• seqinfo
• Seqrange
• seqrslt
• sim4_stats
• sim4Args
• SimpleSelect
• SNavgstd
• Socket
  • ClientSocket
  • ServerSocket
• SocketException
• Sourceprt
• spliced
• SplitResult
• stddev
• Subclparam
• suml
• Tblastn
  • Tblastnmy
  • Tblastnmy
• time
• trainer
• TranscriptExon
  • CDSExon
• Valence
  • HeadNode
• ValidQualifier
• ValNode
• version
• vertexinfo
• WeatherPainter
• WeatherWizard
• word
• wordList