i_fitS.c File Reference

#include <stdio.h>
#include "seqaln.h"

Functions
int	main (int argc, char **argv)

---

Function Documentation

int main	(	int	argc,
		char **	argv
	)

References SEQALN_RESULTS::bestS, SEQALN_RESULTS::bestSj, SEQALN_CONSTANTS::btype, SEQALN_CONSTANTS::cutoff, FIT, fitS(), fsdeclump(), FULL, gen_align(), SEQALN_SEQUENCE::len, LINEAR, load_seq(), SEQALN_CONSTANTS::memuse, SEQALN_CONSTANTS::mtype, SEQALN_RESULTS::naligns, newmem(), NONMATRIX, parseargs(), print_trace(), SEQALN_CONSTANTS::ptype, results_init(), rpt_align(), SEQALN_CONSTANTS::rptalign, SEQALN_CONSTANTS::rptboth, SEQALN_CONSTANTS::rptscore, SEQALN_CONSTANTS::rpttrace, seq1, seq2, SIMILARITY, SQUARE, SEQALN_IO::STDERR, SEQALN_IO::STDIN, SEQALN_IO::STDOUT, SEQALN_CONSTANTS::stype, trace(), and SEQALN_CONSTANTS::traceupper.