intergenic.cpp File Reference

#include "cadbc.h"
#include "Result.h"
#include "Seqrange.h"
#include <algorithm>
#include <bioseq.h>
#include <fstream>

Defines
#define	NONVERBOSE
Functions
void	extractInter (ostream &ous, const string &gnName, const string &gn, vector< Seqrange > &sub, ostream &tous)
int	main (int argc, char *argv[])

---

Define Documentation

#define NONVERBOSE

---

Function Documentation

void extractInter	(	ostream &	ous,
		const string &	gnName,
		const string &	gn,
		vector< Seqrange > &	sub,
		ostream &	tous
	)

References Seqrange::end, Seqrange::name, Seqrange::overlap(), and printFasta().

Referenced by main().

int main	(	int	argc,
		char *	argv[]
	)

References Acenode::asInt(), Acenode::asString(), Aceobj::at(), Acenode::down(), extractInter(), cadbc::fetch(), cadbc::getDNAString(), cadbc::login(), printFasta(), Result::Result(), and Acenode::right().