localS.c File Reference

#include <stdio.h>
#include "seqaln.h"

Functions
void	localS (struct SEQALN_SEQUENCE *seq1, struct SEQALN_SEQUENCE *seq2, struct SEQALN_CONSTANTS *scoring, struct SEQALN_RESULTS *results, struct SEQALN_IO *io)

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Function Documentation

void localS	(	struct SEQALN_SEQUENCE *	seq1,
		struct SEQALN_SEQUENCE *	seq2,
		struct SEQALN_CONSTANTS *	scoring,
		struct SEQALN_RESULTS *	results,
		struct SEQALN_IO *	io
	)

References SEQALN_CONSTANTS::alpha, SEQALN_RESULTS::bestS, SEQALN_RESULTS::bestSi, SEQALN_RESULTS::bestSj, SEQALN_CONSTANTS::beta, SEQALN_SEQUENCE::code, SEQALN_CONSTANTS::deltafn, E, SEQALN_RESULTS::F, SEQALN_SEQUENCE::len, LINEAR, max3(), SEQALN_CONSTANTS::memuse, rpt_row(), SEQALN_CONSTANTS::rptmat, and SEQALN_RESULTS::S.

Referenced by dyaln::align(), main(), and pvlocalS().