lsdeclump.c File Reference

#include <stdio.h>
#include "seqaln.h"

Functions
void	lsdeclump (struct SEQALN_SEQUENCE *seq1, struct SEQALN_SEQUENCE *seq2, struct SEQALN_CONSTANTS *scoring, struct SEQALN_RESULTS *results, struct SEQALN_IO *io)

---

Function Documentation

void lsdeclump	(	struct SEQALN_SEQUENCE *	seq1,
		struct SEQALN_SEQUENCE *	seq2,
		struct SEQALN_CONSTANTS *	scoring,
		struct SEQALN_RESULTS *	results,
		struct SEQALN_IO *	io
	)

References SEQALN_RESULTS::aligned, SEQALN_CONSTANTS::alpha, SEQALN_CONSTANTS::beta, SEQALN_SEQUENCE::code, SEQALN_CONSTANTS::Debug, SEQALN_CONSTANTS::deltafn, E, SEQALN_RESULTS::F, F, gap(), getmaxS(), SEQALN_SEQUENCE::len, markdiag(), max, max3(), SEQALN_RESULTS::S, SEQALN_SEQUENCE::seq, and SEQALN_IO::STDOUT.

Referenced by main(), dyaln::outputAln(), and pvlocalS().