markdiag.c File Reference

#include <stdio.h>
#include "seqaln.h"

Functions
	markdiag (struct SEQALN_SEQUENCE *seq1, struct SEQALN_SEQUENCE *seq2, struct SEQALN_CONSTANTS *scoring, struct SEQALN_RESULTS *results, struct SEQALN_IO *io)

---

Function Documentation

markdiag	(	struct SEQALN_SEQUENCE *	seq1,
		struct SEQALN_SEQUENCE*	seq2,
		struct SEQALN_CONSTANTS *	scoring,
		struct SEQALN_RESULTS *	results,
		struct SEQALN_IO *	io
	)

References SEQALN_RESULTS::aligned, SEQALN_LSTRUCT::i, SEQALN_LSTRUCT::j, LOCAL, SEQALN_LSTRUCT::next, nexti, nextj, SEQALN_CONSTANTS::ptype, and SEQALN_RESULTS::trace.

Referenced by fddeclump(), fsdeclump(), lsdeclump(), pfsdeclump(), and srlsdeclump().