mccaldon.h

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00001 
00002 /* McCaldon-Argos distribution of protein frequencies, for p- and gamma-value
00003    software.
00004 */
00005 
00006 static double seqaln_mccaldon[26] = { /* McCaldon-Argos letter dist for pvm* */
00007         0.083, 0.083, 0.100, 0.153, 0.215,  /* A--E frequencies */
00008         0.254, 0.326, 0.348, 0.400, 0.400,  /* F--J frequencies */
00009         0.457, 0.547, 0.571, 0.615, 0.615,  /* K--O frequencies */
00010         0.666, 0.706, 0.763, 0.832, 0.890,  /* P--T frequencies */
00011         0.890, 0.956, 0.969, 0.969, 1.000,  /* U--Y frequencies */
00012         1.000  };                           /* Z frequency      */
00013 
00014 static double seqaln_dnadis[26] = { /* Even distribution of A,C,G,T for pv* */
00015         0.25, 0.25, 0.50, 0.50, 0.50, 0.50, 0.75, 0.75, /* A--H frequencies */
00016         0.75, 0.75, 0.75, 0.75, 0.75, 0.75, 0.75, 0.75, /* I--P frequencies */
00017         0.75, 0.75, 0.75, 1.00, 1.00, 1.00, 1.00, 1.00, /* Q--X frequencies */
00018         1.00, 1.00 };                                   /* Y, Z frequencies */